Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01919 ATGTCAGAAACTGACTTGGCAGTTATTAAACCTGAGATGATGAAGCCTTATGTTTGGCTTCAAACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCAAACAAGGAACGTAAATCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACGTCTGCTGCAGACAGCCTTCAGTTAAAACCATTAGTTGATCTAACCAGCCGTGCACTTGCTCGAATAATTGAAGGGAAGACGCCAGAGGAGATACGCGATATATTTCATTTGCCCGATGATCTTACAGAGGAAGAAAAGCTGGAGCCATTGAGAAATATAACTGCTGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCTAAAAAGAGAAAAGAATTAAAAGAGCGCGAAAGGTTAAAGAATGTTGAAGTTGAAGAAGAACATGTGGATGATCGTTCAGTTGATGACTTATTGTCTTTTATCAATGGAAATGATGGAGATCCCAAGGGAGTTAAAACTTCAAAGAATAAAAAGAAGAACAGGAGGAAAAAAGAGCAACAGAAGAATTCTTCTCTGAAGGAGGCATCTGAAGTGAACAAGAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGATAATTAGTGAGACCTCCTATTTACACTATGCAGAAGATGATGCTTTTACTTCTAAGCCTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGAGGACAGGGTTGCAGAGTGATTGAACTTTTTGCTTATCTCTTTTTGGGTTTTCAAGAAATCTAA 978 0.3824 MSETDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDDRSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEASEVNKKEVNGHDIRHQSSEAEIISETSYLHYAEDDAFTSKPEFDDGDIDDEIDPALKEKIDRGQGCRVIELFAYLFLGFQEI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01919 325 SUPERFAMILY POZ domain 16 80 IPR011333 -
Viun10g01919 325 MobiDBLite consensus disorder prediction 235 258 - -
Viun10g01919 325 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Viun10g01919 325 Coils Coil 170 190 - -
Viun10g01919 325 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Viun10g01919 325 PANTHER SKP1 14 155 IPR016897 GO:0006511
Viun10g01919 325 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Viun10g01919 325 SMART skp1_3 15 116 IPR001232 GO:0006511
Viun10g01919 325 MobiDBLite consensus disorder prediction 205 258 - -
Viun10g01919 325 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Viun10g01919 325 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Viun10g01919 325 Coils Coil 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01919 Viun-Chr10 33884771 33891664 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01919 - - gmx:100794666 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01919 10 33884771 33891664 Viun10g01919 10 33884771 33891664 ECH
Viun10g01919 10 33884771 33891664 Viun5g00892 5 5585471 5593057 ECH
Viun5g00892 5 5585471 5593057 Viun10g01919 10 33884771 33891664 PCT