Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00873 ATGTCTTCCCCAAGCAAGCGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAACGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGAGAGTCCTTATCATGGTGGTGTGTGGAAAGTGAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAACAAGATCTATCACCCAAATGTTGATGAGATGTCGGGATCAGTGTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCACAACTTCTGCTGTATCCTAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGATCTGCTTATGAGATAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGGCTGAAGACATAGGGGAAGTGACTGAAGAGAAATCCAGTGATGAGGAGATGAGTGAAGATGAATCTGATTCTAGTGATGAACAGGTTGTTGGTAAAGCAGACCCCTAG 552 0.4257 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSAYEIRVKEYCEKYAKAEDIGEVTEEKSSDEEMSEDESDSSDEQVVGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00873 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Viun5g00873 183 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Viun5g00873 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Viun5g00873 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Viun5g00873 183 MobiDBLite consensus disorder prediction 156 172 - -
Viun5g00873 183 CDD UBCc 7 143 IPR000608 -
Viun5g00873 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Viun5g00873 183 SMART ubc_7 4 148 - -
Viun5g00873 183 MobiDBLite consensus disorder prediction 151 183 - -
Viun5g00873 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Viun5g00873 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00873 Viun-Chr5 5476094 5478816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00873 26 178 Miscellaneous Gene Families AT1G17280 22.353 9.12e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00873 K10576 - gmx:100812138 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00873 5 5476094 5478816 Viun5g00873 5 5476094 5478816 ECH
Viun5g00873 5 5476094 5478816 Viun10g01925 10 33967178 33970057 PCT