Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01925 ATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCCTATAAATCTCCTTCCATAGGCTTTATCAATAGAATCTATCACCCAAATGTTGATGAGATGTCTGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTTTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGAGAAGCTGCAGCATTACTGATGCGCGATCGAGCCAGTTATGAACAAAAGGTTAAAGAATACTGTGAGAAGTATGCTAAACCTGAGGACATAGGAGCTGCAACAGAAGAGCAATCTAGTGATGAGGAGCTAACTGAAGATGAAGATGATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG 510 0.4157 MMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINRIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQKVKEYCEKYAKPEDIGAATEEQSSDEELTEDEDDDSSDEQVAGKADP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01925 169 MobiDBLite consensus disorder prediction 134 169 - -
Viun10g01925 169 SUPERFAMILY UBC-like 4 133 IPR016135 -
Viun10g01925 169 FunFam Ubiquitin-conjugating enzyme 5, E2 1 144 - -
Viun10g01925 169 Gene3D Ubiquitin Conjugating Enzyme 1 146 IPR016135 -
Viun10g01925 169 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 133 IPR000608 -
Viun10g01925 169 Pfam Ubiquitin-conjugating enzyme 3 127 IPR000608 -
Viun10g01925 169 CDD UBCc 1 128 IPR000608 -
Viun10g01925 169 MobiDBLite consensus disorder prediction 141 161 - -
Viun10g01925 169 SMART ubc_7 1 133 - -
Viun10g01925 169 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Viun10g01925 169 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 14 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01925 Viun-Chr10 33967178 33970057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01925 11 163 Miscellaneous Gene Families AT1G17280 24.118 2.41e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01925 K10576 - gmx:100804969 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01925 10 33967178 33970057 Viun10g01925 10 33967178 33970057 ECH
Viun5g00873 5 5476094 5478816 Viun10g01925 10 33967178 33970057 PCT