Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00861 ATGGGTTTCAATTTGATTCTATGGTATCATCCCAATCTGGTTCTCGCTGTTCTGCTGCTCTTTTCCTGTTCCTTTGGCCTTTTCTCTGCAAATGATGAAGTGGGCACGGCTCAAGGTGAAACCTTTACTGTTTCGAGCTTCAGTTACCCTGAGACTAGGCTCAGGCCCTTTGATTTGCGCTACATCAGAGTTGACTTGCCGCCATGGTTTTCTGCACTGTCTATAGCATTGAAGTCAGATGTAGATATTGATATCTCAAGAATTGAAAGGGTTCCCATACGCACATTGCCAATAATATGCTTTAGAGATGGAAGTCCTCCACTACCAGATGCCTTAAACACATCTCTGAAAGATTCAGCCACTTCTGGAATAAATGGTCTAGATGTGGAGCAGTGCTTTCCCATGCAGAAAAATATCACTATGAAACTGACAAACAATCAGATATCTCCAGGTGTTTGGTACATTGGTCTTTTCAATGGAATTGGACCTACAAGGACACAATCAAAGATGATTATCCGCGGTCCATCATATTCCTTTATTGCCAATATAAGTGTGGAAGCATGCACAAATTCAATGATGAGGGGAGATTTCTGTAACAGTACAGTTTATCCACTTTCGTGCAAATCATCTGATCTCTCTAATGCTTTGGAAACTAAAGTGAACAAGTCATTGTTGGAAAATTTGGTGACCTGCAAAAGTAATTCTGAAGCATTTTGTGTTCATGAAGGTGTGCCAAACTTCTTCTCCCTGGACATAATGAATGTGGCAGAAGAAATTATCATTACGGCAACAAATATCAGATTCAATGTTACTTCATTGAATGATGTTAGTTTAATGTGTTTTGTCCGCCATGGTGCTATGCCTTCGGTGACTTCAAATGATTATTCCATTGATATAGCTAAAAGTCCCCTGGTTATTCATTCACCATTGATTGGCCGTTGGTATATTAGTATAGTGCCAGTCAATCTTACAAAAACTCAGGTTAGCAATGTAAGAGTTTGCTATTCGGTGGAATCGCAAGTGCTTCAATGTCCACTTGGAAAAGCTGGACCAAATTGTATAATGGATAGCTACTTGCTTCAGACATTTCTAAGGAGAGGTTCAACCCCTTTTGAATCCTATTATTTACCAGTTGGTGGAGCACCTTATGATTCTGCCAATTTCCCTCTTGAGCCACTTTTAAAAAACTCATCATACATTGGAGAATCTGATAGCATTTGGACTTACTTTCTTTTGGACATTCCTCGCGGTGCTGCTGGAGGAAATATTCACATACAGCTATCCTCAAATACAAAGATTGGTTATGAAGTGTATGCTAGATTTGGTGGATTACCATCTCTAGATAGCTGGGACTATTATTATGCTAACAAGACCAGGAGAAGTGACCCATCTATGTTTTTCACGCTGTATGACTCAAGTGATACCAAAGTTAACTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGCTTTGGTCTAAGACATCTTAGTAGCAACAATGACTCCATAAAAGGGCTAAATATCATGTCCATTTCACTTGAGCGATGCCCAAAGCGATGTTCCTCTCATGGAGACTGTAAATTTTCGTTTGACGCTAGTGGACTAACATCTTACAGCTTCTGCTCTTGTGATCGAAACCATGGAGGCTTTGACTGCAGCATTGAGATTGTAACACATCAAGGGCATGTACGACAATCAATTTTTCTCATTGTATCAAATGCTGCAGCCATACTTCCTGCCTATTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTTTATACACATCCAGTGGGATTTCAAGTGGACTATATCATGCGTGTGATGTTGGCACTTGGTGTGCATTGAGCTATAATGTCTTACAGTTCATGGACTTCTGGCTCTCATTCATGGCTGTGATTAGCACTTTTCTTTATCTAACTACCATTGATGAAGTATTTAAGAGGGCAATCCACACAGCTGTTGCTATCCTTACTGCCCTAATGGCTGCAACAAAAGCAACCAGGTCTTCCAATGTTATGCTTGTGATTGTGATTGGTGCTCTTGGTTTGTTTGTTGGATGGTTGATAGAAATCTCAACAAAGTATAGGTCCCTTTCCTTTCCAACTGGAATCTCATTCAACTTCTCTCACTGTTTCCAAACTATAAAGCGATGGCTCTATAATCTTGTCAAGACACTTTTGAGACGGTACCACTTGGCTTTTGCCTTTGCTGGTTTTACTGCATTGGCCATGGCAGCAATAAGCTGGACACTTGAAACCAGTGAATCCTACTGGTTTTGGCACAGCATTTGGCATATTACAATATACACTTCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAATATTGAGGACAGTGAGACAACGCATCCTGCAGATGGAAACTATGAACTGACTCATCAGGATTCACTTCCAAGAAGTGGTTAG 2427 0.4042 MGFNLILWYHPNLVLAVLLLFSCSFGLFSANDEVGTAQGETFTVSSFSYPETRLRPFDLRYIRVDLPPWFSALSIALKSDVDIDISRIERVPIRTLPIICFRDGSPPLPDALNTSLKDSATSGINGLDVEQCFPMQKNITMKLTNNQISPGVWYIGLFNGIGPTRTQSKMIIRGPSYSFIANISVEACTNSMMRGDFCNSTVYPLSCKSSDLSNALETKVNKSLLENLVTCKSNSEAFCVHEGVPNFFSLDIMNVAEEIIITATNIRFNVTSLNDVSLMCFVRHGAMPSVTSNDYSIDIAKSPLVIHSPLIGRWYISIVPVNLTKTQVSNVRVCYSVESQVLQCPLGKAGPNCIMDSYLLQTFLRRGSTPFESYYLPVGGAPYDSANFPLEPLLKNSSYIGESDSIWTYFLLDIPRGAAGGNIHIQLSSNTKIGYEVYARFGGLPSLDSWDYYYANKTRRSDPSMFFTLYDSSDTKVNFYIMYAREGTWGFGLRHLSSNNDSIKGLNIMSISLERCPKRCSSHGDCKFSFDASGLTSYSFCSCDRNHGGFDCSIEIVTHQGHVRQSIFLIVSNAAAILPAYWALRKKALAEWVLYTSSGISSGLYHACDVGTWCALSYNVLQFMDFWLSFMAVISTFLYLTTIDEVFKRAIHTAVAILTALMAATKATRSSNVMLVIVIGALGLFVGWLIEISTKYRSLSFPTGISFNFSHCFQTIKRWLYNLVKTLLRRYHLAFAFAGFTALAMAAISWTLETSESYWFWHSIWHITIYTSSFFFLCSKANIEDSETTHPADGNYELTHQDSLPRSG 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00861 808 ProSitePatterns EGF-like domain signature 1. 541 552 IPR000742 -
Viun5g00861 808 PANTHER FIVE-SPAN TRANSMEMBRANE PROTEIN M83 9 806 IPR021910 GO:0016020
Viun5g00861 808 Pfam Protein of unknown function (DUF3522) 562 767 IPR021910 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00861 Viun-Chr5 5413073 5420575 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00861 - - gmx:100778959 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00861 5 5413073 5420575 Viun5g00861 5 5413073 5420575 ECH
Viun5g00861 5 5413073 5420575 Viun10g01936 10 34048995 34056311 PCT