Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01973 ATGGAATCCCTAAACAAAGCCTCACTCCTCTTACTCCCTCTCTTGCTCCTTTCCCTGCTCAGCCATTCCCATGGTGGAGGAATAGCTGTGTACTGGGGCCAAGACGTTAGAGAAGGCACCTTAGCAGAAACTTGCAACACCAAAAACTACCAATTTGTGAACATAGCCTTTTTGTCCACTTTTGGCAATAGCCAAACCCCTCAACTCAACCTCGCTGGCCACTGTATCCCCCAGAACAATGGTTGCAATGGCTTGAGCAGTGACATCACAACTTGCCAAAACGGTGGAGTCAAAGTGTTCCTCTCCCTTGGAGGAGGTGCTGGAAGCTACTCCCTCAACTCAGCTGAGGAAGCCAATCAACTTGCATCCTACCTCTGGGACAATTTTCTTGGAGGACAATCTGGGTCAAGACCATTAGGAGAGGCAGTGTTGGATGGCATTGACTTTGACATTGAGTCTGGTGGGAGTGAACATTGGGATGAACTAGCCAGGGCACTCAATGGGTTGAGTTCACAAAGAAAGGTGTATTTGTCTGCAGCTCCACAGTGCATAATCCCTGATCAACACTTGGATTCTGCCATCCAAACTGGGCTTTTTGACTATGTGTGGGTTCAGTTCTACAACAACCCTTCTTGCAGTGGAAACGCCAACAACTTGATCAGTTCATGGAACCAGTGGATCACTGTGCCAGCCACACAAGTCTTCATGGGGCTTCCTGCAGCAGAAGAAGCTGCTCCAAGTGGTGGTTTTGTCCCTTCTGATGTGTTAATTTCTCAGGTTCTTCCTCAGATAAAACAGTCTTCAAAGTATGGTGGAGTTATGCTGTGGAACAGATTCTATGATCTCCAAAAAGGTTACAGTAATAGTATTATTGGCAGTGTTAATTAG 888 0.4673 MESLNKASLLLLPLLLLSLLSHSHGGGIAVYWGQDVREGTLAETCNTKNYQFVNIAFLSTFGNSQTPQLNLAGHCIPQNNGCNGLSSDITTCQNGGVKVFLSLGGGAGSYSLNSAEEANQLASYLWDNFLGGQSGSRPLGEAVLDGIDFDIESGGSEHWDELARALNGLSSQRKVYLSAAPQCIIPDQHLDSAIQTGLFDYVWVQFYNNPSCSGNANNLISSWNQWITVPATQVFMGLPAAEEAAPSGGFVPSDVLISQVLPQIKQSSKYGGVMLWNRFYDLQKGYSNSIIGSVN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01973 295 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Viun4g01973 295 PANTHER ENDOCHITINASE 12 290 - -
Viun4g01973 295 Pfam Glycosyl hydrolases family 18 28 281 IPR001223 GO:0005975
Viun4g01973 295 CDD GH18_hevamine_XipI_class_III 26 292 IPR045321 -
Viun4g01973 295 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 295 IPR001223 GO:0005975
Viun4g01973 295 FunFam Acidic endochitinase SE2 26 294 - -
Viun4g01973 295 SUPERFAMILY (Trans)glycosidases 22 290 IPR017853 -
Viun4g01973 295 Gene3D Glycosidases 26 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01973 Viun-Chr4 34927044 34928809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01973 17 294 Glycoside Hydrolase AT5G24090 58.304 5.18e-118 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01973 K01183 - gmx:100815291 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g01973 4 34927044 34928809 Viun7g03156 7 34212179 34213312 PCT