Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00293 ATGAGCTTGAAGAAAAAGGCCTTTTCAATTAACATTGAAGAGGCTGCTGTGGACTTTTTCAACCATCTCTTGCAGGAGAAGCCCAGAATTCCAGTTTTCATTCCTCTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTCTCTGCCTCCTCTTGGGTTCCTCTTGCTCTTGCTGTGTGGACTACCATACAGTATGGGAAATACCAACGCAAATTACTCGTGGAGGACTTGGATAAGAAATGGAAGAGGATCATACTGAATGTCTCGCCCATCACACCATTGGAGCATTGTGAGTGGTTGAATAAGTTGTTGACAGAAGTCTGGTCCAACTATTTTAATGCCAAGTTTTCAATAAGGCTATCTGCAATTGTTGAGAAACGTATAAAGCTCCGGAAACCGAGACTTCTTGAAAGAGTTGAGCTACAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTGGCTCTGAGAGGGATGCGTTGGTCAACTATTGGTGATCAGCGATTTCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCAAAGCCGTTGATTGGAACTGCTAGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCTACGCCAATTCTTGATGGAAAAGCACTTCTGTACTCATTTGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGCGGTGGGAGCCAATCACTTCCTGCCACTGAATGGCCTGTTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCTTGGTAAAAACCATGGTGGAACCTCGGCGACGTTGTTTCACTTTGCCTGCAGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTATATATATTAGAGTGATTTCAGCGAATAAACTTTCTGGTAGTTGCTTTAAGACATCTAGGAGGCAACCAAATGGTTCAACCAATGGTTATTCAGAGGAGAATTTTGATGACAAGGATCTGGAGACATTTGTAGAAGTAGAAGTTGAGGAATTAACCAGGAGAACAGATGTTAGATTTGGTTCAACCCCAAGATGGGATGCACCATTTAATATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATCAGAGCCATCCCAACAATGTGAGGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCCATAGGACCTGATTCTGGAGTCATAGCAAAGCAGGCACAGTTCTGTGGAGAAGAAATTGAAATGGTTGTACCGTTTGAGGGCCCCAACTCTGCCGAGTTGAAGGTGAGCATTGTAGTCAAAGAGTGGCAATTTTCTGATGGTTCGCATAGCTTGAACAGTATCCGGAGTAGCAACTCTCAGCAGTCAATTAATGGATCACCAAATTTTCAGTTAAAAACTGGAAGGAAAATTAGTGTAACTGTTGCAGAAGGAAGGGATCTTGCTGCAAAAGACAAAAATGGAAAATTTGACCCTTATATCAAATTGCAATATGGAAAGGTTGTCCAGAAATCAAGAACTGGTCATACTCCAAATCCTGTCTGGAATCAGACATTTGAATTCGATGAGATTGGTGGTGGGGAATACTTAAAAATAAAAGGCTTCTCTGAAGAAATTTTTGGAGATGAAAACATTGGTAGTGCTCATGTGAATTTGGAAGGACTGGTTGATGGCTCAGTGAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATATCGGTTAGAGTGGATGACCAAGAAGGATCAAAGGGTTCGAGTTTTGGCTCAGGCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCTGCCGATCTCAGAGGCACAAGTGATCCATATGTGAGAGTACACTACGGAAGCTTTAAGAAAAGAACAAAGGTCATATACAAAACTCTTAATCCTCAGTGGAACCAGACCTTAGAGTTCCCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAAGATCATAATGCATTATTACCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGGGGTGAAATTCACGTCCAAATCACTAGAAAAGTTCCAGAGTTGCAGATGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACGAAATTCCTAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTACAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAGGAAGGTTATATAGCTCAGCTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCAAAGAGATCATTAATTCTTCTCCTTCCCTCAGCAGAAGATCTTCTTCAGCTGGAAATTGA 2481 0.416 MSLKKKAFSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAVERWLFSASSWVPLALAVWTTIQYGKYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNAKFSIRLSAIVEKRIKLRKPRLLERVELQEFSLGSCPPSLALRGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLATPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPVVSSWLEKLFADTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSGSCFKTSRRQPNGSTNGYSEENFDDKDLETFVEVEVEELTRRTDVRFGSTPRWDAPFNMVLHDNTGTLRFNLYQSHPNNVRCDYLASCEIKLRHVEDDSTIMWAIGPDSGVIAKQAQFCGEEIEMVVPFEGPNSAELKVSIVVKEWQFSDGSHSLNSIRSSNSQQSINGSPNFQLKTGRKISVTVAEGRDLAAKDKNGKFDPYIKLQYGKVVQKSRTGHTPNPVWNQTFEFDEIGGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVDGSVRDVWIPLERVRSGELRLQISVRVDDQEGSKGSSFGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYKTLNPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPELQMRQSLDSEPSLSKLHEIPNQIKQMMIKFRSFIEDGNLEGLSTTLSELETLEDTQEGYIAQLETEQMLLLSKIKELGKEIINSSPSLSRRSSSAGN 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00293 826 CDD C2 615 711 - -
Viun4g00293 826 ProSiteProfiles C2 domain profile. 585 709 IPR000008 -
Viun4g00293 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 483 594 IPR035892 -
Viun4g00293 826 Coils Coil 789 809 - -
Viun4g00293 826 Gene3D C2 domain 290 424 IPR035892 -
Viun4g00293 826 Gene3D C2 domain 468 596 IPR035892 -
Viun4g00293 826 Gene3D C2 domain 597 726 IPR035892 -
Viun4g00293 826 CDD SMP_SF 117 277 - -
Viun4g00293 826 ProSiteProfiles C2 domain profile. 463 579 IPR000008 -
Viun4g00293 826 PANTHER OS01G0128800 PROTEIN 7 822 - -
Viun4g00293 826 Pfam C2 domain 615 711 IPR000008 -
Viun4g00293 826 Pfam C2 domain 292 402 IPR000008 -
Viun4g00293 826 Pfam C2 domain 484 581 IPR000008 -
Viun4g00293 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 328 404 IPR035892 -
Viun4g00293 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 611 724 IPR035892 -
Viun4g00293 826 SMART C2_3c 292 408 IPR000008 -
Viun4g00293 826 SMART C2_3c 484 578 IPR000008 -
Viun4g00293 826 SMART C2_3c 614 708 IPR000008 -
Viun4g00293 826 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00293 Viun-Chr4 1725189 1732308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00293 452 746 Lipid Metabolism Gene Families AT3G61300 24.269 9.05e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00293 - - gmx:100789237 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00293 4 1725189 1732308 Viun3g00212 3 1207828 1214256 ECH
Viun4g00293 4 1725189 1732308 Viun4g00293 4 1725189 1732308 ECH
Viun3g00212 3 1207828 1214256 Viun4g00293 4 1725189 1732308 PCT