Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00212 ATGAGTAGTACCGGTAGTAAGAAAAGGTTCAATCCTATTCACCTTGAAGAGGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGGTGAAAGAGAAGACGGGCTGGGTTTCACTCCTCCTTCCTCTCATTTTCATTGCTTGGGCTATTCACAGATGGCTATTTTCTTTCTCCAATTGGTTTTCCCTTGCTCTTGCTCTATGGGCATCTATGCAATATGGGAAGTATCAGCGCAAACTACTGGAGGAAGACTTGAATAAGAAATGGAATCGGATCCTACTCAAAACCTCGCCAGTGACACCATTGGAACACTGCGACTGGTTGAATCTGCTGCTGACACAAGTATGGTCTAACTATTTTAACCCCAAGTTCTCAAGAAGGTTATCAGCCATAGTTGAAAAACGCTTAAAGCTCCGAAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACATCGGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGACACAAGCGAGATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAATCTTCATATAAAGGGTGAGCTTTTGGTGACTCCAATTCTAGATGGAAAGGCACTTTTGTATTCATTTTCCTCCACACCTGAAGTGAGAATAGGAATTGCCTTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCTGGGGTTTCTCCATGGCTGGATAAACTTTTTACCGATACGTTGGTTAAAACCATGGTGGAACCTCGACGTCGTTGTTTCAGTTTGCCTGCGGTTAATTTGGGGAAAACTGCTGTTGGAGGCGTTATATACGTGTCAGTGATTTCAGCAGACAAACTTTCTTGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAGTCAATGGATGTTCAGAAAGCAACCTGGATGACAAGGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGTCATGGTTCAAATCCAACGTGGGATACTACATTTAATATGGTTTTACATGATAATACAGGCATTGTTCGCTTCAATCTTTATGAGCGTCCTTCCAGCGGTGTAAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAACATGCGAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGTACCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTACTAATTCTCAGCGATCACTTATTGGATCATCAACTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAATTGTAGAAGCAAAGGATCTCGTTACAAAAGACAGATCTGGAAAAGTTAGTCCATACGTCAAATTGCAATATGGAAAGGTTGGTAAGAGAACAAAGGTTGCTCCTACTACTACTACAAATCCTTCCTGGAATGAATCATTTGATTTTGATGAGAATGATGGTGATGAATATCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGAGATGAAAATATTGGTACTGCAAATGTAAATTTGGAAGGACTAGGGGACGGGTCAATCAAGGATGAATGGATCCCACTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGGGTGGAGGACCAAGAAGGATCAAGGGGTTCAACTAATGGTTGGATAGAACTTGTTGTGATTGAAGCAAGAGACCTTATTGCTGCCGATCTTCGAGGAACAAGTGATCCTTATGTGAGGGTGAACTATGGGAACTTAAAGCGGAGAACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACGATGGTAGTCCCCTGACACTGCATGTTAGGGACCATAATGCTTTACTACCCACATCAAGTATAGGGGAATGTGTTGTAGAATATCAAAGGTTACCTCCAAACCAGATGTCTGACAAATGGATACCTCTCCAAGGGGTTAAAAGTGGCGAGATACACATCCAAATTACAAGAAAAGTTCCAGAGATGCAAACAAGAAGTTCCCTAGACTCTCAACCATCTTCGTTAAGTAAATCACACCAAATTCCTATTCAGATGAGAGAGATGTTGAAAAAGTTTCGATCATTAATAGAGGATGGAAATCTTGAAGGACTGACAACAACTTTGAGCGAGTTAGAAAGTCTAGAGGATACAATGGAAGGGTACGTAGCACAGCTGGAGACCGAGCAAATGCTTCTTCTCAGCAAAATAAATGAACTGGGTCAGGAGATCCTCAATTCTTCTTCTTCCCTCTCTAGTAGTCCTTCTCAAAATCGAAATTAA 2487 0.4154 MSSTGSKKRFNPIHLEEAAVDLLNHVVKVKEKTGWVSLLLPLIFIAWAIHRWLFSFSNWFSLALALWASMQYGKYQRKLLEEDLNKKWNRILLKTSPVTPLEHCDWLNLLLTQVWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMSILMLAKLSVGTARIVINNLHIKGELLVTPILDGKALLYSFSSTPEVRIGIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPAVNLGKTAVGGVIYVSVISADKLSWSCFKSSPSLRQQNSTVNGCSESNLDDKDLQTFVEVEVEELTRRTGLSHGSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWQFSDGSHSLNNLRTNSQRSLIGSSTLLSKTGRKLKITIVEAKDLVTKDRSGKVSPYVKLQYGKVGKRTKVAPTTTTNPSWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVSSGELRLKIEVVRVEDQEGSRGSTNGWIELVVIEARDLIAADLRGTSDPYVRVNYGNLKRRTKVIHKTLNPRWNQTLEFLDDGSPLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRSSLDSQPSSLSKSHQIPIQMREMLKKFRSLIEDGNLEGLTTTLSELESLEDTMEGYVAQLETEQMLLLSKINELGQEILNSSSSLSSSPSQNRN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00212 828 PANTHER OS01G0128800 PROTEIN 15 825 - -
Viun3g00212 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 603 IPR035892 -
Viun3g00212 828 CDD SMP_SF 123 278 - -
Viun3g00212 828 Pfam C2 domain 321 405 IPR000008 -
Viun3g00212 828 Pfam C2 domain 486 585 IPR000008 -
Viun3g00212 828 Pfam C2 domain 616 712 IPR000008 -
Viun3g00212 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
Viun3g00212 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 611 725 IPR035892 -
Viun3g00212 828 SMART C2_3c 615 709 IPR000008 -
Viun3g00212 828 SMART C2_3c 486 582 IPR000008 -
Viun3g00212 828 SMART C2_3c 293 411 IPR000008 -
Viun3g00212 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 331 406 IPR035892 -
Viun3g00212 828 Gene3D C2 domain 291 432 IPR035892 -
Viun3g00212 828 CDD C2 616 712 - -
Viun3g00212 828 ProSiteProfiles C2 domain profile. 589 710 IPR000008 -
Viun3g00212 828 ProSiteProfiles C2 domain profile. 468 583 IPR000008 -
Viun3g00212 828 Coils Coil 780 811 - -
Viun3g00212 828 Gene3D C2 domain 474 601 IPR035892 -
Viun3g00212 828 Gene3D C2 domain 602 727 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00212 Viun-Chr3 1207828 1214256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00212 487 726 Lipid Metabolism Gene Families AT3G61300 25.091 1.80e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00212 - - gmx:100805496 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00293 4 1725189 1732308 Viun3g00212 3 1207828 1214256 ECH
Viun3g00212 3 1207828 1214256 Viun3g00212 3 1207828 1214256 ECH
Viun3g00212 3 1207828 1214256 Viun4g00293 4 1725189 1732308 PCT