Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00292 ATGGCGTTCTCTAACACTTGTAAACTCTCCGAATTTTCTTTCTCAACACTCAACCCTCCTCCTCCTCATCGCTCTTTCCACAAATTCCCATTTCGCACACTCACCTTCGCTTCTCTCCCAACCCCTAAACCCAACGTGTCTGCACCCTGGCTCACCAAATCGCCCTCTCCCAAAAGGGTCACCGAACCCCTCACTGCCGACGACCCAATTCACCGGACAACCCCAAAACAACCGCAGAACGCCGTCGAGAGGATCGTCCTTCGGTTGCGCAACTTGGGTCTGCCTTCAGAAGAAGAAGAGCAAGAAGAACGACAGCAAGAAGTTCCGGCAAGTACTCCGGCGCCGGCGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGAGTGGGTGCGGCCGGACGCCGGGCTGGTGGGCGAGGATGGGGAGGAGGAGATGATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTGGTGGTGGTTGGGGGTGGAAGGGATGAAGAAGGGTTGAAGAAGAGGAGGGTTACGGCTCCTAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTTCCCAAGGCTGGACTCACTCAGGAGGTGATGGAGAAGATTCATAAGAGGTGGATGAAGGAGGAATTGGTGAGGCTCAAGTTTCACGAGGAACTTGCGAAGGATATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACTGGAGGATTGGTTACATGGAGGGCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGACCTGACTCGAGGAAGGAAGTTAATGACAAGAAAGGTAATGAATTTTTTGTGCCTGATGTCTCATCAGGAAGTTTGTCGAAAAGTGAAGTCAGTAATGCAGTGTCATCTCTAGAAAAGAGTGAGGTGGTAGAGAGGGAGCAAGAACAGTCTAAGAATTTGACAGAGGCAGAAGCAGAGTACAATGCACTTCTTGATGATTTAGGTCCCCGTTTTGTTGGATGGTGGGGTACGGGGATACTTCCTGTTGATGCTGATTTACTTCCAAGAACCGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGGTCTCGACTGACAAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAACTTTGGGAGAAAAGTTTAGTTGCAAAGATTGCTGTGAAACCTGGCATCCAGAACACAAACAATGAACTGATGTCTGATGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTCGTTCCGACAAGTGTGGCTACTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTACAGGATGTTGAAGACAAGTTCCGGTGCAGAGCAGTTGATGCAATTCCAACAGGGCAAGGTGAAGCTACAGCACAGGCTGGGACTCTAGCAGAGTTCTACGAGGCCCAGGCTCGATGGGGAAGGGAAATATCTCCCGGAGAACGGGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTTTAGCCCAGACCAAAAAGCATAGAGCAGAAAAGCTCTTAGCTAAAATAGAATCGTCGATGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATTACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTTGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCTAGGTTACTTGAATATGAGAGTGGCGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTCTTATTTACTATCGTGGAAAGAATTACAAGCGGCCAATTAATCTGAGGCCAAGAAACCTTCTAACGAAGGGAAAGGCACTAAAGAGACACGTAGCCATGCAACGACACGAGGCTCTGAGTCAGCATATTACGGAACTGGAAAACACTATAGAACAATTGAAAAAAGAACTTGATAAGCCTCAAGATTTGGATGATGAAGATGGGGCCAGCACAGAGGAAGAGGATCATAACCAAATAGACAACATCTCAGAATTGACCCTAAGTGAGAATGAAGATTCTGATGGTTTTGATGATGAGGAAGAAGGTGACTGGTTAGATGATGGGGAAGATAGTGATTGGGAAGATGATGAAGACCCAAGTTTTCCAAATTCATAA 2400 0.4633 MAFSNTCKLSEFSFSTLNPPPPHRSFHKFPFRTLTFASLPTPKPNVSAPWLTKSPSPKRVTEPLTADDPIHRTTPKQPQNAVERIVLRLRNLGLPSEEEEQEERQQEVPASTPAPATGDERLSELLRREWVRPDAGLVGEDGEEEMMLPWEREEEKVVVVGGGRDEEGLKKRRVTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRAGSVMMVYRGIDYQGPDSRKEVNDKKGNEFFVPDVSSGSLSKSEVSNAVSSLEKSEVVEREQEQSKNLTEAEAEYNALLDDLGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKPGIQNTNNELMSDELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVATVLAEREEMTKQVQDVEDKFRCRAVDAIPTGQGEATAQAGTLAEFYEAQARWGREISPGEREKMVEEAAKAKTAKLVRKIEHKLFLAQTKKHRAEKLLAKIESSMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPINLRPRNLLTKGKALKRHVAMQRHEALSQHITELENTIEQLKKELDKPQDLDDEDGASTEEEDHNQIDNISELTLSENEDSDGFDDEEEGDWLDDGEDSDWEDDEDPSFPNS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00292 799 Coils Coil 475 495 - -
Viun4g00292 799 Coils Coil 230 250 - -
Viun4g00292 799 Coils Coil 711 738 - -
Viun4g00292 799 Pfam CRS1 / YhbY (CRM) domain 382 466 IPR001890 GO:0003723
Viun4g00292 799 Pfam CRS1 / YhbY (CRM) domain 594 669 IPR001890 GO:0003723
Viun4g00292 799 Pfam CRS1 / YhbY (CRM) domain 185 267 IPR001890 GO:0003723
Viun4g00292 799 MobiDBLite consensus disorder prediction 732 799 - -
Viun4g00292 799 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 773 IPR045278 GO:0000375|GO:0003729
Viun4g00292 799 ProSiteProfiles CRM domain profile. 591 691 IPR001890 GO:0003723
Viun4g00292 799 MobiDBLite consensus disorder prediction 96 125 - -
Viun4g00292 799 SUPERFAMILY YhbY-like 592 690 IPR035920 -
Viun4g00292 799 FunFam CRM-domain containing factor CFM3B, chloroplastic 592 694 - -
Viun4g00292 799 SMART CRS1_YhbY_2 184 267 IPR001890 GO:0003723
Viun4g00292 799 SMART CRS1_YhbY_2 593 680 IPR001890 GO:0003723
Viun4g00292 799 SMART CRS1_YhbY_2 382 466 IPR001890 GO:0003723
Viun4g00292 799 MobiDBLite consensus disorder prediction 47 83 - -
Viun4g00292 799 Gene3D - 593 695 IPR035920 -
Viun4g00292 799 ProSiteProfiles CRM domain profile. 182 278 IPR001890 GO:0003723
Viun4g00292 799 Gene3D - 182 283 IPR035920 -
Viun4g00292 799 Gene3D - 381 474 IPR035920 -
Viun4g00292 799 MobiDBLite consensus disorder prediction 765 799 - -
Viun4g00292 799 FunFam CRS2-associated factor 1, chloroplastic 183 278 - -
Viun4g00292 799 ProSiteProfiles CRM domain profile. 380 477 IPR001890 GO:0003723
Viun4g00292 799 SUPERFAMILY YhbY-like 382 473 IPR035920 -
Viun4g00292 799 FunFam CRS2-associated factor 1, chloroplastic 381 477 - -
Viun4g00292 799 SUPERFAMILY YhbY-like 183 273 IPR035920 -
Viun4g00292 799 Coils Coil 312 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00292 Viun-Chr4 1717758 1723754 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00292 - - gmx:100788177 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00292 4 1717758 1723754 Viun4g00292 4 1717758 1723754 ECH
Viun3g00213 3 1214570 1219910 Viun4g00292 4 1717758 1723754 PCT