Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00213 ATGCGTTTGAACGTCACAAATGCTTTACTATCATCACTCCCACTCGCTTTACCCTCTTCCTACGCTCTCTTCGCCTCTTCCAAATTCAAATTCACATTCTCACTCAAAGTTTGCATTCGCGTTCGCGCTCTCAACACCTTATCCTCTCTCCCAACAACTCGCCACGACGACTACGATGATTTGTTCGCCCCTATTCCCCCTCTCCGCCCCGCCGACAAAGCCATCAACGCCATCGAAAGAATCGCCCTACGGTTGCGGAACTTAGGGTTAAACTCCACCGACCACGCCGACGACGATGATTTCCTGCGTCGCGAATGGCTTCGTCCCGACGAGGCGCTTTTACCGTGGGACAAGCGAGAAGGGGAAGAGTACGAGGAGCACGCGGAGCACGCGGAGCACGAGGAACACCAGAAGGAGAAGCTAAAGAAGAGGAGTGTTAATGCAGCGACACTGGCGGTTAAAACGCTGGAGGAGGAGGAGCTGCGGCGGTTGCGGACACTGGGAATGAGTCTTAAGGAGAAGGTCACTATCCCCAAAGCTGGGCTGACGCGAGCCGTGCTCGACAAGATTCACCGTCAGTGGAGCAACTGCGAGTTGGTGAGACTCAAGTTTCACGAGCTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTGTACCGAGGTAGAAATTACCAAGGGCCGATGCAACCAATTGAAAAGGAAGGAGATGATCGAATTCCTGTGCCAGCAGACGGTGACACAGCGCTGTTACTGGCAAAGAGTGAGGCAGTTTTCTGGAAGGAGGAGAACATGACGCCTGAAGAAGTGGAGTTTAACAGGATGCTTGATGGCTTTGGTCCACGTTTTGTTGAATGGTGGGGCACCGGAATACTTCCAATTGATGCTGATTTACTTCCCCCCACAGTTCCTGGTTACAAGACGCCTCTTAGGCTTCTTCCTGCTGGAATGCATCCACGAATGACCAATGATGAACTCACGAATATGCGGAAACTTGCTAAATCTCTTCCATGTCACTTTGCCTTGGGGAGAAATAGAAACCTTCAAGGTCTGGCTTCTGCTATTCTCAGGCTTTGGGAGAAAAGTTTGGTTGCAAAGATTGGAGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTCCTGCGGAACAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTACTGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGACATAGCTCCTTCAAGGGAAGATGAATCAAAATCCCAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAAGCATGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGCTTGCCAAAAAAATTGAATGTAAACTAGCTCTTGCCCAAGCCAAAAGGCTTAGAGCAGAAAATCTATTAGCGAAAATAGAAGCATCTTTGGTTCCAGTTGGCCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAAGCATACTTGCCACTTGGTATACGTGGTGTTTTTGACGGTGTCATTGAGAATATGCATTTGCACTGGAGGCATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTACTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATAAAGTTCCTAAAGGATTTTCTCTTATTTACTATCGAGGAAAGAATTATAGGCGACCTGTGACTCTAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCATTGCAGCGGTCAATAGCCATGCAACGGCATGAGGCTCTGAGTCAGCATGTTACTGAATTGGGGGAGAAAATAGAAAAAATGAAAAAAGAACTCGGTGAGGATGAATTCTCTGACGGAGATGACAATTATGGTGATTTCAATGGCGAGGAATACAGTGATTACAATGATAAGAATTCTGAATTTTAG 2160 0.4606 MRLNVTNALLSSLPLALPSSYALFASSKFKFTFSLKVCIRVRALNTLSSLPTTRHDDYDDLFAPIPPLRPADKAINAIERIALRLRNLGLNSTDHADDDDFLRREWLRPDEALLPWDKREGEEYEEHAEHAEHEEHQKEKLKKRSVNAATLAVKTLEEEELRRLRTLGMSLKEKVTIPKAGLTRAVLDKIHRQWSNCELVRLKFHELLAQNMKLAHQIVECRTRGLVIWRSGSYMWVYRGRNYQGPMQPIEKEGDDRIPVPADGDTALLLAKSEAVFWKEENMTPEEVEFNRMLDGFGPRFVEWWGTGILPIDADLLPPTVPGYKTPLRLLPAGMHPRMTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVATVIAERQEMTKHVQDVEEKVRCKVHDIAPSREDESKSQAGSLAEFYEAQACWGRDISTEERERMRQEVAKAKNAKLAKKIECKLALAQAKRLRAENLLAKIEASLVPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPVTLRPRNLLTKAKALQRSIAMQRHEALSQHVTELGEKIEKMKKELGEDEFSDGDDNYGDFNGEEYSDYNDKNSEF 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00213 719 Coils Coil 668 688 - -
Viun3g00213 719 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 73 711 IPR045278 GO:0000375|GO:0003729
Viun3g00213 719 SUPERFAMILY YhbY-like 339 430 IPR035920 -
Viun3g00213 719 SUPERFAMILY YhbY-like 155 248 IPR035920 -
Viun3g00213 719 ProSiteProfiles CRM domain profile. 548 648 IPR001890 GO:0003723
Viun3g00213 719 Coils Coil 487 537 - -
Viun3g00213 719 Coils Coil 124 144 - -
Viun3g00213 719 FunFam CRM-domain containing factor CFM3B, chloroplastic 549 651 - -
Viun3g00213 719 MobiDBLite consensus disorder prediction 689 719 - -
Viun3g00213 719 MobiDBLite consensus disorder prediction 124 143 - -
Viun3g00213 719 SMART CRS1_YhbY_2 339 423 IPR001890 GO:0003723
Viun3g00213 719 SMART CRS1_YhbY_2 550 637 IPR001890 GO:0003723
Viun3g00213 719 SMART CRS1_YhbY_2 156 239 IPR001890 GO:0003723
Viun3g00213 719 FunFam CRS2-associated factor 1, chloroplastic 338 434 - -
Viun3g00213 719 ProSiteProfiles CRM domain profile. 337 434 IPR001890 GO:0003723
Viun3g00213 719 SUPERFAMILY YhbY-like 549 647 IPR035920 -
Viun3g00213 719 ProSiteProfiles CRM domain profile. 154 250 IPR001890 GO:0003723
Viun3g00213 719 Pfam CRS1 / YhbY (CRM) domain 339 423 IPR001890 GO:0003723
Viun3g00213 719 Pfam CRS1 / YhbY (CRM) domain 551 637 IPR001890 GO:0003723
Viun3g00213 719 Pfam CRS1 / YhbY (CRM) domain 156 239 IPR001890 GO:0003723
Viun3g00213 719 Gene3D - 155 254 IPR035920 -
Viun3g00213 719 Gene3D - 549 648 IPR035920 -
Viun3g00213 719 Gene3D - 338 432 IPR035920 -
Viun3g00213 719 FunFam CRS2-associated factor 1, chloroplastic 155 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00213 Viun-Chr3 1214570 1219910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00213 - - vra:106765477 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00213 3 1214570 1219910 Viun3g00213 3 1214570 1219910 ECH
Viun3g00213 3 1214570 1219910 Viun4g00292 4 1717758 1723754 PCT