Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05753 ATGGAGGAACCGAGTAAACTGAGGCGTGCCCTGATTGATTCCTCGGCCGGAGCAATTTCCGGAGGAATATCACGGACTGTTACATCGCCCCTCGATGTTATTAAGATTAGATTCCAGGTTCAACTGGAACCCACATCTTCATGGGCTTTACTACGTAAGGATTTGGCTGCAGCTGCGTCTGCACCATCAAAATATACTGGCATGTTTCAAGCAACCAAAGATATTCTAAGAGAAGAAGGCGTCAAGGGATTTTGGCGGGGAAATGTCCCGGCATTGCTAATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACATAAGTTGAAGACTTTTGTCTCTGGCTCTTCAAAGACAGAGAATCACATTCATTTGAGCCCTTATCTTTCATATGTCAGTGGAGCATTAGCTGGGTGTGCAGCTACAGTAGGTTCATATCCTTTTGATCTTCTCCGTACCATATTAGCATCTCAGGGGGAACCAAAGGTATATCCAACCATGAGATCAGCATTCATTGATATTGTTCGTACACGTGGATTCCAAGGCTTGTATTCTGGACTGTCCCCTACTCTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACGTATGATACATTTAAGCGTTGGGCCATGGCTTGGAATCATAGAGTTTCCAACACTGCTGTAGAAGACAATATCTCTAGCTTTCAGCTTTTCCTTTGTGGGTTAGCAGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTCGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGACATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAACATGTTCGATGCCATGCAACGGATATTGCGATTAGAGGGTTGGGCTGGTTTGTACAAGGGGATAATCCCATCTACTATTAAAGCTGCACCTGCTGGTGCTGTTACATTTGTTGCTTATGAGTTGACATCAGATTGGCTAGAGTCCGTTTTTAGTTGA 996 0.4378 MEEPSKLRRALIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAAASAPSKYTGMFQATKDILREEGVKGFWRGNVPALLMVMPYTAIQFTVLHKLKTFVSGSSKTENHIHLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFIDIVRTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHRVSNTAVEDNISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMQRILRLEGWAGLYKGIIPSTIKAAPAGAVTFVAYELTSDWLESVFS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Viun3g05753 331 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Viun3g05753 331 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 328 - -
Viun3g05753 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Viun3g05753 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
Viun3g05753 331 PANTHER SOLUTE CARRIER FAMILY 25 14 326 - -
Viun3g05753 331 Pfam Mitochondrial carrier protein 126 212 IPR018108 -
Viun3g05753 331 Pfam Mitochondrial carrier protein 228 326 IPR018108 -
Viun3g05753 331 Pfam Mitochondrial carrier protein 14 114 IPR018108 -
Viun3g05753 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Viun3g05753 331 SUPERFAMILY Mitochondrial carrier 9 320 IPR023395 -
Viun3g05753 331 Gene3D Mitochondrial carrier domain 6 328 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05753 Viun-Chr3 62905526 62909810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05753 1 328 Organic Solute Cotransporters AT3G21390 74.174 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05753 K15108 - gmx:100784986 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05753 3 62905526 62909810 Viun9g00192 9 1153164 1157347 PCT