Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05730 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCCGAATTGGCTCTCTGCGGCTCACCACCTTCCATCTCCCAATTCCAAAAGGCTCAGACTGTCGGCAACATCCGACAACCACGCGGACCCTGTGTTATCCTCGAGTAGTATCGTTTCCAGAATTTCCAAATACCCTGAAGCCAAGCCACTGGGGCGTAGGGAGGTTCACGCGCCGTGTAGACCCCGTAAGTTTGATTTTCCTACGTTTAATAGAATGAAATCGAGCTTGAATGCTAGTAGTAGTTATTATGATCGCAAGGAAGAGATTGTTAACGATGTCGGCAACACGCTGAGTGAAAATTACGAAAGGGCGAAAAAATCAGCGTTAGCTAGCATTAGGTTTGAGGAAAAGGGTAAGGAGGTGATAGAAGTGGATGATGGTAGTCCCAAGGGCATGGTTTCCGAAGATTCGGGCGTGGAGGAGGTTCGTTTTAGGGAAGATGGACGGGATGTGCGCTCTGTGGTGACGGAGCACAAGTGGCAAGAGGGTGATTTGGTTGTGACTGAAGTGAAGGATTTGAAAGCTAAGGATGTGCGTGGCGGTCCTCAGCAGCAGTCAGCTTCATCTGTGGTTTCGGAGTTGACTAACGGCGATTTGAATGTTGTTAATGCTGTGAAGATGTTCGGCACTCTATCTTTAACTCCTGAGCGTGATCTTTCGGATGTTCATGCCTACAAGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGATTAAGAGGCTGTCGGCTGAAATTAAGCTTAATGAGAAGCGTAGGTCCACATTTGAATTGTTGCGCCCGAAGAAGGAACTAGTACAGGAAGTGCCATTGGAACCTTTTATTCCTCTTACTGAAGATGATGAGTTAGAGGTTACACGTGCCTTTTCTGCCAACAGGAGGAAGATCTTGGTTGCCCATGAGAAATCGTGCATTGAGGTCTCAGGAGAAAAATTTCAATGCCTTAGACCCGGTGCATGGTTAAATGACGAGGTAATAAATTTGTACCTTGAATTGCTAAAAGAAAGGGAGAGAAGAGAGCCCCAGAAGTTTCTGAACTGTCATTTTTTCAATACTTTTTTCTACAAGAAGTTAATAAGTGGCAAGGGTGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGCCTACATGAATGTGATAAAATTTTTGTTCCTATCCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTACTTGGATTCACTGAAAGGAATAGACACCCATGTGATGAAAGTTCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATCTTGATGTAAGTTCTTGGGAAAAGGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGCTCTGAAGTATTTCCTGTAATTTGTGGGCGAATTGTTTTCTAA 1464 0.4447 MAVVTSNGKRRPNWLSAAHHLPSPNSKRLRLSATSDNHADPVLSSSSIVSRISKYPEAKPLGRREVHAPCRPRKFDFPTFNRMKSSLNASSSYYDRKEEIVNDVGNTLSENYERAKKSALASIRFEEKGKEVIEVDDGSPKGMVSEDSGVEEVRFREDGRDVRSVVTEHKWQEGDLVVTEVKDLKAKDVRGGPQQQSASSVVSELTNGDLNVVNAVKMFGTLSLTPERDLSDVHAYKKLLEAVDKRSDTIKRLSAEIKLNEKRRSTFELLRPKKELVQEVPLEPFIPLTEDDELEVTRAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDEVINLYLELLKERERREPQKFLNCHFFNTFFYKKLISGKGGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKDKKFQYLDSLKGIDTHVMKVLASYIVDEVKDKTGKDLDVSSWEKEFVEDLPEQQNGSEVFPVICGRIVF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05730 487 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 136 475 - -
Viun3g05730 487 SUPERFAMILY Cysteine proteinases 285 475 IPR038765 -
Viun3g05730 487 ProSiteProfiles Ubiquitin-like protease family profile. 316 487 IPR003653 GO:0006508|GO:0008234
Viun3g05730 487 MobiDBLite consensus disorder prediction 1 31 - -
Viun3g05730 487 Gene3D Adenoviral Proteinase; Chain A 285 484 - -
Viun3g05730 487 Pfam Ulp1 protease family, C-terminal catalytic domain 331 475 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05730 Viun-Chr3 62754840 62760012 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05730 K08592 - gmx:100805645 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05730 3 62754840 62760012 Viun3g05730 3 62754840 62760012 ECH
Viun3g05730 3 62754840 62760012 Viun9g00171 9 1042687 1048532 PCT