Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05718 ATGCATGCACAACACAAATCCCCAAAGACATACCCGACACTTTCCCAGGTATTAGAAGAAGTAAAGAGAATGACAGACATAGGGTTTCCAATATCAGCCATGAGCCTTGTGGGGTACCTTAAAAACCTGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTAGAGTTAGCTGGAGGCTCTTTGGCCATAGGCTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTCTAACTCTCCACAGAACAATTCTCATGTTACTTCTTTTTTCTCTCCCCATTTCTCTTCTCTGGCTCAACCTCCAACCTCTCATGCTTTTCCTTCACCAGAATCCAGACATAACCCGTGTAGCAACCCTCTATTGCCGCTTCGCCATCCCCGACCTCATAGCCAATAGCTTCCTCCACCCTCTCCGCATCTATCTACGCAGCAGAGGAACAACTTGGCCACTGCTCTGGTGCACTCTACTCTCCATTCTCCTACACCTTCCCACCATCACCTTTTTAACCTTCAAACTCCACCTTGGCGTGCCGGGAATCGCTGTCTCATCCTTCGTGGCCAATTTCAACAACCTTTTCTTCCTTCTCCTCTACATGTTCTACACACGCGTCCCCGAGGAGTCCTTACACGTGCCATTACTACTCTCTCGCACCACGTCACATGATAATACTGTGATAACATGTAGTGGTGGTACTCTTGCCATGGAATGGGGTGTGCTGATGAAATTTTCAATACAGAGCTGTCTAGCTGTTTGCCTGGAATGGTGGTGGTACGAATTGATGACAATTTCCGCAGGCTACCTCAACAACCCTCGTGTTGCTCTAGCCACGGCGGGGATAGTGATACAAACCACATCGCTTTTGTACACTTTGCCGACGGCATTAAGCGCATCGGTGTCAACGAGAGTCGGGAACGAACTCGGGGCGGGGCAAGGTGAAAGAGCGAGTTTGGCAACGGTGGTAGCGATTGGATTAGCACTTGCAAGCTCAATTTTTGGTTTATTGTGGACCACTGTGGGAAGAGAAAGGTGGGGGAGAGTGTTCACGAGTGACGGTGAGGTGCTGCAACTGAGTATGGCGGTGTTACCTATAATTGGAGTTTGTGAGTTAGCGAATTGTCCACAAACCACAAGCTGTGGAATCCTGAGAGGGAGTGCTAGGCCTGGTGTTGGCGCTGTCATAAACTTTTGCTCCTTTTATCTGGTGGGAGCACCGGTAGCCATTGTTTTGGCCTTCGTTTGGAAACTTGGGATGGTGGGGCTGTGTTATGGGTTGCTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCGTTGTGGTGTATAAAACTGATTGGGAAAGGGAATCATCGAAAGCCAGAAGCTTGGTGGGAAAGGGTGTGTGTGGCACTTTCGCATTTGAAGAAGGTGTTGTCTTTCTCAAACAGAACAACTCTGAGAAGTGA 1509 0.4904 MHAQHKSPKTYPTLSQVLEEVKRMTDIGFPISAMSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLHRTILMLLLFSLPISLLWLNLQPLMLFLHQNPDITRVATLYCRFAIPDLIANSFLHPLRIYLRSRGTTWPLLWCTLLSILLHLPTITFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMFYTRVPEESLHVPLLLSRTTSHDNTVITCSGGTLAMEWGVLMKFSIQSCLAVCLEWWWYELMTISAGYLNNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQGERASLATVVAIGLALASSIFGLLWTTVGRERWGRVFTSDGEVLQLSMAVLPIIGVCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFVVVYKTDWERESSKARSLVGKGVCGTFAFEEGVVFLKQNNSEK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05718 502 NCBIfam MATE family efflux transporter 40 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun3g05718 502 CDD MATE_eukaryotic 20 473 IPR045069 GO:0042910|GO:1990961
Viun3g05718 502 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 467 - -
Viun3g05718 502 Pfam MatE 269 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun3g05718 502 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05718 Viun-Chr3 62656764 62658939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05718 K03327 - gmx:100801932 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05718 3 62656764 62658939 Viun3g05718 3 62656764 62658939 ECH
Viun3g05718 3 62656764 62658939 Viun9g00148 9 922345 924607 PCT