Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05560 ATGATCAGTTTTCGCTCACTCTGTTGCAAGAAGCTCTATCCACAACTCTTTCTTCACTCTTCACTGCCAGTGTTTCCCACCAACCATATTCTTTTTTCCTCTCTCTTCCCTCACTTCAACCACCGCAAATTAATGTACGCCACGGAACTTTTTGGCGTCTTCGCCGTCCACGGCAGCGATGCTTCGCCGGCAGTGGCGTCCACCAGCCTCACCACCAACCACAATTGCTTCAAGATTGCAGCCTTTACCAGACCCACTTCCCATAACGGCGTGAATTTGAAATCAGAAAAGGCTTTGAAGCCTTTTCGTTGCAGCGCCGACTCAAACTCTGACTTCTTCTCTGTGACGTCGTCGAACAAGTCCGACGTGGACTACCTTGGGCAGAGTACCAGAGGTGATTTGAATGTCAAGTCGGAGCATCTTGAGGCTTCTGGATTTGATGGTCATGCTGCTTTAGAAGGTCCAATTGAGGAAGTGGCCAGATCAGAAGCAAGACAAGCAGGGGATTTGCTAAAAGATTTGGGCATTCCGAGCCTTTCTTCATCCAGAAATTCGCCTCGTGGAATATTCTGCAGCCGTACATTGAATCTGAGGTCCATCAGTGCCATTGGATATGACATGGACTATACCTTGATTCATTATAACGTGATGGCTTGGGAAGGCAGGGCTTATGACTACTGTATGGAAAACCTTAGGAACATGGGTTTCCCTGTTGATGGACTTGCCTTTGATCCTGACCTGGTAATTAGAGGCCTTGTCATAGACAAAGAGAAAGGAAATTTGGTTAAAGCTGATCGATTTGGTTACATAAAAAGAGCCATGCATGGCACCAAAATGTTATCTACTCGAGCTGTGAGTGAGATGTATGGAAGAGAACTGGTGGACCTGCGAAAGGAGAATCGATGGGAGTTTCTCAATACACTGTTTTCTGTGTCTGAAGCTGTGGCCTACATGCAGATGGTTGACAGATTGGATGATGGGACTATACCAGCAGATCTTGGCCCTCTCGATTATAAAGGACTATATAAGGCTGTTGGAAAAGCTCTTTTCTGGGCACATGTAGAAGGTCGCCTTAAGAGCGAGATCATGTCTAAGCCTGAACTTTTTGTGGAACCTGATCCAGAATTACCTTTGGCGCTTCTGGATCAGAAGGAGGCTGGTAAAAAACTTCTGCTGATTACCAACTCAGATTATCATTACACTGACAAAATGATGCGGCATTCTTTTAATAGATTCCTTCCCAATGATATGAGTTGGCGAGATCTATTTGACATTGTAATTGTCTCTGCAAGAAAACCAGAGTTCTTCCAAACATCACACCCCATGTATGAAGTCGTCACAGATGAGGGTCTTATGCGTCCATGCTTCAAGGCTCAAACTGGTGGTTTGTATTCAGGGGGAAGTGCACAAATGGTTGAAAATTCTCTAGGTATTCATGGAGATGAGATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCCAAAGTCCATTTGCGATGGCGGACAGCATTGATTTGTCGAGAACTGGAAGAAGAGTACAATGCCTTGATTGGTAGCCGGAGTTATAGAGAATCACTGGTGGAGCTTATAAATCAAAAGGAGGTAGTAGGGGATCTCTTTAACCAACTTCGGCTGGCTCTGCAGAGGCGAAGCAAAGACCGTCCTGCTCAGACCCTAGCAGCAACTAACATGAATGATGAAGACCTCACTGATAGCATGCAAAAGCTACTTATTGTTATGCAAAGACTGGATAAGAAAATTGCTCCAATGCTGGAGGCTGACGGGGAGCTCTTCAATTCAAGGTGGGGTTTTCTATCTCGTGCTGGACTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAATATGCCGACATTTATACATCTAGGGTGTCAAACTTTTTGGATTATACGCCCTTCATGTATTTCCGCTCTCAGGAGCAGAACCTTGCGCATGACTCGTACACATACTATTGTTCACAACTTAATAATGAGCATTCTGCCTAG 2016 0.4484 MISFRSLCCKKLYPQLFLHSSLPVFPTNHILFSSLFPHFNHRKLMYATELFGVFAVHGSDASPAVASTSLTTNHNCFKIAAFTRPTSHNGVNLKSEKALKPFRCSADSNSDFFSVTSSNKSDVDYLGQSTRGDLNVKSEHLEASGFDGHAALEGPIEEVARSEARQAGDLLKDLGIPSLSSSRNSPRGIFCSRTLNLRSISAIGYDMDYTLIHYNVMAWEGRAYDYCMENLRNMGFPVDGLAFDPDLVIRGLVIDKEKGNLVKADRFGYIKRAMHGTKMLSTRAVSEMYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRLDDGTIPADLGPLDYKGLYKAVGKALFWAHVEGRLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMRHSFNRFLPNDMSWRDLFDIVIVSARKPEFFQTSHPMYEVVTDEGLMRPCFKAQTGGLYSGGSAQMVENSLGIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALIGSRSYRESLVELINQKEVVGDLFNQLRLALQRRSKDRPAQTLAATNMNDEDLTDSMQKLLIVMQRLDKKIAPMLEADGELFNSRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLDYTPFMYFRSQEQNLAHDSYTYYCSQLNNEHSA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05560 671 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 182 656 IPR008380 -
Viun3g05560 671 CDD HAD_cN-II 190 512 - -
Viun3g05560 671 Pfam 5' nucleotidase family 189 657 IPR008380 -
Viun3g05560 671 Gene3D - 352 539 IPR023214 -
Viun3g05560 671 FunFam Haloacid dehalogenase hydrolase 348 539 - -
Viun3g05560 671 SUPERFAMILY HAD-like 186 658 IPR036412 -
Viun3g05560 671 NCBIfam HAD-IG family 5'-nucleotidase 189 529 IPR008380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05560 Viun-Chr3 61408671 61416145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05560 - - vun:114174902 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05560 3 61408671 61416145 Viun3g05560 3 61408671 61416145 ECH
Viun3g05560 3 61408671 61416145 Viun9g00570 9 4242005 4265199 PCT