Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05442 ATGGCGATATTCTCCGAATCGAATCACCATCACAACGCTTCCGATGGGGTGTCCCAGCGAGTCAACAGCCCGCGTTTCTCCGGCCCAATGACTCGCCGCGCCCACTCCTTCAAGCGCAACACTGACAGTGCCAACTCCAACGGCGGCTCCGGTGAGGTTGAGCTCCAAATCAACTCGCCCAGATCGGAAGAGGGGTCGGAGGGTGTTCCAGTGGGGAGGCACAGTCACAATCACGTGACCCAGAGAGTGCACGTGAGGGGGCTGCTGAAGAAGCCCCTTGCTTCCATCGTTGAGGATTTGGGGTTTAGGGAAAAGAAGAAAATTGGGCACTTGATGTTCTTGGTGTTCTGTGGGGTGTGCATCTTCATTGGTGTTCTCAAGATATGTGCCACTGGCTGGCTTGGATCTGCCATTGAAAGAGCTCAATCAGATAAGGAACTGCCTGACTCCATTGCTAGTCTAAATCTAATGGACAAAAGCTCCCTTGGTTATGCATATAGGGGAGGAGCAAGTGATGTTGAACGAACATTAAAAACATTAGCAACTGGAGTAGGTGGCAGCCATTCTGCCATGGCTGAAGATTCAGGGATCTGGTCTAAGCCCAACAGTGACAATTTCACCCAATGCATAGATCTTCCAAGTAATCGAAAAAAACTTGATGCAAAGATCAATGGCTACATTCTAGTAAATGCAAATGGTGGTCTGAATCAGATGAGATTTGGGATATGTGATATGGTTGCTGTTGCTAAGATTATGAAGGCCACGCTTGTTCTTCCTTCTCTTGATCACACCTCCTATTGGGCTGATAATAGTGGCTTCAAGGATTTGTTTGATTGGAAGTATTTTATTCATATGCTGAAGGATGATGTACACGTAGTTGAGAAATTACCTCCTGCTTATGCTGGAATTGAGCCTTTCCCGAAAACTCCCATATCTTGGTCCAAGGTTTCTTACTATAAGACTGAGGTTCTTCCCCTCCTAAAACAGCACAAAGTGATCTATTTCACTCATACCGATTCCAGACTCGCTAATAATGACATTCCACATTCCATACAGAAACTAAGATGCCGTGTAAATTACAGAGCACTGAAATATTCAGCTCCAGTTGAGGAATTTGGAAACACGCTGGTATCTAGAATGCAACAGAATGGAAGTTCGTATCTTGCCCTTCATTTGAGATATGAGAAGGATATGCTTGCATTTACAGGATGCAGTCATAATTTGACTGCAGAAGAAGACGAAGAACTGAGACAGATGCGATATGAAGTAAGTCACTGGAAAGAGAAGGAGATTAATGGGACCGAGAGGAGATTGCTAGGAGGTTGTCCATTAACTCCAAGGGAAACTTCCCTATTACTTAAAGCATTGGGTTTTCCATCACACACCAGGATTTATCTGGTAGCTGGAGAAGCATTTGGAAGAGGGAGTATGAAATATCTCAAGGATGATTACCCCAACATTTTCTCTCATTCCTCTCTGTCCTCTGAAGAAGAGTTGAATCCTTTCAAGAATCATCAGAACATGTTGGCCGGTATAGACTATGTTGTCGCCCTAAAGAGCGATGTTTTTCTTTACACTTATGATGGAAATATGGCAAAGGCGGTACAAGGTCATAGGCGCTTTGAAAACTTCAAGAAGACCATCAATCCAGACAAGATGAATTTTGTTAATCTTGTTGATCAATTGGATGAAGGAAAAATTTCATGGAAAAAGTTTAGCTCCAAGGTCAGAAAACTGCATGAAGACCGAATTGGTGCTCCATACCCAAGGGAACCTGGAGAATTTCCAAAGCTGGAGGAAAGTTTTTATGCAAACCCTCTGCCAGGATGCATTTGTGAAAGAAGATAG 1848 0.441 MAIFSESNHHHNASDGVSQRVNSPRFSGPMTRRAHSFKRNTDSANSNGGSGEVELQINSPRSEEGSEGVPVGRHSHNHVTQRVHVRGLLKKPLASIVEDLGFREKKKIGHLMFLVFCGVCIFIGVLKICATGWLGSAIERAQSDKELPDSIASLNLMDKSSLGYAYRGGASDVERTLKTLATGVGGSHSAMAEDSGIWSKPNSDNFTQCIDLPSNRKKLDAKINGYILVNANGGLNQMRFGICDMVAVAKIMKATLVLPSLDHTSYWADNSGFKDLFDWKYFIHMLKDDVHVVEKLPPAYAGIEPFPKTPISWSKVSYYKTEVLPLLKQHKVIYFTHTDSRLANNDIPHSIQKLRCRVNYRALKYSAPVEEFGNTLVSRMQQNGSSYLALHLRYEKDMLAFTGCSHNLTAEEDEELRQMRYEVSHWKEKEINGTERRLLGGCPLTPRETSLLLKALGFPSHTRIYLVAGEAFGRGSMKYLKDDYPNIFSHSSLSSEEELNPFKNHQNMLAGIDYVVALKSDVFLYTYDGNMAKAVQGHRRFENFKKTINPDKMNFVNLVDQLDEGKISWKKFSSKVRKLHEDRIGAPYPREPGEFPKLEESFYANPLPGCICERR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05442 615 MobiDBLite consensus disorder prediction 40 63 - -
Viun3g05442 615 PANTHER OS02G0726500 PROTEIN-RELATED 104 613 - -
Viun3g05442 615 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g05442 615 MobiDBLite consensus disorder prediction 1 77 - -
Viun3g05442 615 Pfam GDP-fucose protein O-fucosyltransferase 226 541 IPR019378 -
Viun3g05442 615 CDD O-FucT_plant 226 547 IPR024709 -
Viun3g05442 615 PIRSF UCP009360 75 615 IPR024709 -
Viun3g05442 615 FunFam O-fucosyltransferase 28 357 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05442 Viun-Chr3 60377959 60384651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05442 197 614 Miscellaneous Gene Families AT2G37980 66.746 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05442 - - gmx:100801100 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05442 3 60377959 60384651 Viun3g05442 3 60377959 60384651 ECH
Viun3g05442 3 60377959 60384651 Viun9g00477 9 3386672 3390279 PCT