Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05405 ATGTCTAAAGTTGAAGGTGGTAAAAGAAGTGCTGAAGAGAACAATTTGCCATTAAAAGATGTTGAAACCGTAGACAAAGCTCTGCGCAGAGAGAAAAGCTCTTCCAATAATTCAAAATCTTCGAAATCCCAGTTACTTGATCCCAAATCAAAGGCTAAAGATAGCAAAGAAGATGACTTACGTAAGGAGAAGAAGTCTGTATGGAATTGGAAATCATTGAAGGCCCTTTCTCTGTCTCGCAGTAAGAAGTTCAATTGTAGTTTTTCTGTGAAAGTCCATGTGATTGAAGGGTTGCCTTCGAGTTTCAATGATTCTTGCCTGTGTGTGTACTGGAAGAGAAAGGATAAGCTTTTGGTGACCCCTCCGGCCAAGGTGATTCAAGGTGTGGCTGAGTTTCAAGACATTTTGACACACACTTGCTCAATCAATGGAAGTAGGAGTCGACCCCTAAACCCTGCCAAATATGAAGCCAAGCCTTTTCTGCTCTATGCTTCTAAGGCTGGTGCCCCGGAACTTGATTTGGGGAAGCACAGAGTGGACCTCACAAAGTTGCTTCCTCTCACTCTGGAAGAGCTTGAACAGGAGAAAAGGTCAGGGATATGGACTACAAGTTTTAGATTATCAGGAACAGCAAGAGGTGCAGTAATCAATGTCAGTTTTGGGTATCTCATTGTTGGTGACAATACTAGTGCTACCATCATCAGAGACAAACTTTGTGATCCTCATAATGTACTAACTACCAAGAAAAATGGTATGCCTTTGTTGGAACCAGATAAAAAACCTAGTGATGGGAATAAAGATTATTCATCTCAAAATGTAGATGAGGTGAAAGATCTTCATGAGGTGTTGCCATCATCAAATTCAGCTCGAGCCAGCCCAGCGTACATCTCATGTAAAGAATTTGTTGAAGAAAGGAGTTGTAGTCCTCTGCATGGCAAACCTGAACTCGAGGGAAGTAAAGAAAACATCGACCCGATCAAACCAGTTGTTTGTTCTTCATTTGATAATGAAAAGGACAAGGCAGAAGAGAATCCAGGTAATGAGGAAAAAACATGCAGTCCAGAGCACGACACACCTGAAGTTTTTGTTTTTCAACAAAACCTGGACACAGTTACGCCAAATGACCATCCTTTACCTGATTCTGGAATAGAAAATTTCAAAGATTGTGAAGGTAATGAATTTTCTGTCGTTGAAAAGGGCATCGAATTTTCATCAGATGAACTTGTTAAACCAGAGGAATCTACTGGAAAAGCTTTCATTGATGTCTACACAGTTGACAGTACTCGGACCCTTGATAATGCTGGTATTCAAGTATCTTTTCAAGACCATGATAATCAGAATTCCCTCGATGAACTAACCGATAATTCTAAGGAAAGTGTTGTGGTACTTGAATTTTCTAACCGAAAGGATGACTTGCCAACGAAAGAACATCTACTGCAAGAACTAGAATCAGCTTTAACTAGTGTCTCAGAGTTGGAGACAGCGGCAATGGATTCTCCTGTAGCCATGGAAGTCAAATCTGAATATAAGTGGAGAAGGTCAAAAAGCTGGGATGATGTTACAGAATCAGTTGCCAGTGAGTTTTTAAGTATGCTTGGCATAGACAATAGTCCAAGGGGTTTGAGTTTTGAAGGTGAGTCTCCAAGAGAGCTCCTTTTAAGACAATTTGAGAATGAAGTTCGTTCAGGGGGCTTCTCTTTGTTTGATTTTGACATGGGCAGTGATAATGAAGCAGATAGTGGTAATGATTTTTCTTTTGGATCTGAGCATTGGAAGTTCTCTAAGGATACTAAGCCAGCATCCTCAATGCAAGATGCACATAAAGGGAATCTAATTGAGTTTGAGGATGTGAGGAGCAAACAGAAGGTGCGTATGCTAGAACACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGATGGCTTTTCAACATTCTCCTAAAAGAGATCATAATGGCTTAGGAAGTCCAATATATTTGCTTCCTGAAGAGACTCTACCATTACCTCCTCTAGCAGAGGGGTTAGGTCCTTTTCTTCAGACCGAAGATGGGGGCTTTCTACGGTCAATGGATCCCACACTCTTCAGGAATAGTAGAACTGGTGGAGCATTAATCATGCAGGTTTCAAACCCAATTGTGGTGCCTGCTGAAATGGGTTCTGGGATAATGGAGATTTTGCAGGGCTTTGCTTCTGTGGGAATTGAAAAACTTTCCAAACAGGCAAACAAGTTAATGCCTCTACAAGACATCACAGGGAAGACAATGCAACAAATATCAAGGGAAGCAAAGCCAGTCGTGGGGGGAACATACAGGAAATTACATTTGCAGCATAATTTGGTAACACGACAGGATTCTACTTGTGAGCAAAAAGGCTTGAAGGGAATTCTATCTGGTGGACTAATGTCTAATAAGTTGAGTTCAGATTCAGCTAGAGACCACAGAAGCTCGGATCTTGTTCTACTAGCTATGGATAAAATTGAAGCACTTTCACTGGAGGGTTTGAGAGTACAATCTGGGATGTCAAATGGGGATGCTCCATCAAACATCAGTGCACAATCCTATGGGGATATTTCAGCTCTGCAAGGCAAGGGGGCTGGTAATAGAGGCTCTCTTGGGCTAGATGGAACTGCTGCCATGCAATTGTTGGATATGAAAAACAGCAACAGTGATGAATATGACGGTATTGATGGCATAATGGCCCTATCATTAACTCTTGATGAATGGATGAGGTTGGATTCTGGAGAGATTGATGATGATATAGATAACATCAGTGAGCATACATACAAACTTCTTGCGGCCCATCATGCAAACTCGTTTGACTTGATACGTGGGAAGAGTTCAAAGGGGGAGAAGAAAAGAGGGAGGAAATATGGTTTGTTGGGAAACAAATTCATAGTGGCTCTGATGGAGCAGCTTCGTGATCCTCTGAGAAACTATGAGCCTGTTGGGACACCGATGCTTGGTCTTATACAAGTGGAGAGAGTGTTCATCCAACCAAAGCAACAGATTTATAGGCCCTTGTGGAAGGCAGGGAAGGAGAGTGATGAGTGTGAAATAGTGGCGAGGGTGGAGATGAAGGGGAAGAAAGAAGAGAAAAGTAGTGAAGAAGAGGGCATTCCTGAATTCAAAATTACAGAAGTGCATGTTGCAGGTGTTCAGAAAAGGAAGTTTTGGAGCAGTTGGGGACGACGGCGACAACAAGAACAATCTGCTTCACGGTGGTTGATTGCAAATGGAATGGGGAAGAGCTTTAAGAATCCAGTGCTGAAACCAAATGCTCCGATCACTAACACAAACGTGCAACCGGGTGACTCATTGTGGAGCATATCATCTCGTATTTACGGTACACTCACAAGATGGAATTGGTAA 3375 0.4204 MSKVEGGKRSAEENNLPLKDVETVDKALRREKSSSNNSKSSKSQLLDPKSKAKDSKEDDLRKEKKSVWNWKSLKALSLSRSKKFNCSFSVKVHVIEGLPSSFNDSCLCVYWKRKDKLLVTPPAKVIQGVAEFQDILTHTCSINGSRSRPLNPAKYEAKPFLLYASKAGAPELDLGKHRVDLTKLLPLTLEELEQEKRSGIWTTSFRLSGTARGAVINVSFGYLIVGDNTSATIIRDKLCDPHNVLTTKKNGMPLLEPDKKPSDGNKDYSSQNVDEVKDLHEVLPSSNSARASPAYISCKEFVEERSCSPLHGKPELEGSKENIDPIKPVVCSSFDNEKDKAEENPGNEEKTCSPEHDTPEVFVFQQNLDTVTPNDHPLPDSGIENFKDCEGNEFSVVEKGIEFSSDELVKPEESTGKAFIDVYTVDSTRTLDNAGIQVSFQDHDNQNSLDELTDNSKESVVVLEFSNRKDDLPTKEHLLQELESALTSVSELETAAMDSPVAMEVKSEYKWRRSKSWDDVTESVASEFLSMLGIDNSPRGLSFEGESPRELLLRQFENEVRSGGFSLFDFDMGSDNEADSGNDFSFGSEHWKFSKDTKPASSMQDAHKGNLIEFEDVRSKQKVRMLEHLETEALMREWGLNEMAFQHSPKRDHNGLGSPIYLLPEETLPLPPLAEGLGPFLQTEDGGFLRSMDPTLFRNSRTGGALIMQVSNPIVVPAEMGSGIMEILQGFASVGIEKLSKQANKLMPLQDITGKTMQQISREAKPVVGGTYRKLHLQHNLVTRQDSTCEQKGLKGILSGGLMSNKLSSDSARDHRSSDLVLLAMDKIEALSLEGLRVQSGMSNGDAPSNISAQSYGDISALQGKGAGNRGSLGLDGTAAMQLLDMKNSNSDEYDGIDGIMALSLTLDEWMRLDSGEIDDDIDNISEHTYKLLAAHHANSFDLIRGKSSKGEKKRGRKYGLLGNKFIVALMEQLRDPLRNYEPVGTPMLGLIQVERVFIQPKQQIYRPLWKAGKESDECEIVARVEMKGKKEEKSSEEEGIPEFKITEVHVAGVQKRKFWSSWGRRRQQEQSASRWLIANGMGKSFKNPVLKPNAPITNTNVQPGDSLWSISSRIYGTLTRWNW 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05405 1124 Coils Coil 475 495 - -
Viun3g05405 1124 MobiDBLite consensus disorder prediction 337 356 - -
Viun3g05405 1124 MobiDBLite consensus disorder prediction 1 58 - -
Viun3g05405 1124 MobiDBLite consensus disorder prediction 247 270 - -
Viun3g05405 1124 MobiDBLite consensus disorder prediction 1 36 - -
Viun3g05405 1124 MobiDBLite consensus disorder prediction 253 270 - -
Viun3g05405 1124 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1123 IPR039614 -
Viun3g05405 1124 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 81 224 IPR019448 -
Viun3g05405 1124 ProSiteProfiles C2 NT-type domain profile. 76 224 IPR019448 -
Viun3g05405 1124 CDD LysM 1102 1123 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05405 Viun-Chr3 60172363 60176248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05405 - - vra:106766502 1890.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05405 3 60172363 60176248 Viun3g05405 3 60172363 60176248 ECH
Viun3g05405 3 60172363 60176248 Viun9g00455 9 3183892 3188379 PCT