Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05304 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTGGCTGCCACTTTGCTCAGCCTCAGAGGCAGTTCCCTGAGAAGGGCTTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGCTCTGCTTCAATGTGGCTCTCAACAGGCTCCCAACAGCACCGGCTCCTTTGATCCACACTCAGCCCTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTTACCATCAAGGTTGAACTGGAACATCTCATAACATCAATCCTTGATGACCCTAGCGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGATTCCTCACCCCATTCTGTTTTCCAGTGTTACAACAGCTCTGGTGGTGTGTTTTCTTCTCCTTGCTCACCCTCTTCCAGTGAGAACCACAGGGAAACAACCACCAACCCTGCCAACTTCAGGCAGACTCATCATTTCTTAACTTCTTATGCTTCTGAGTTCCACCCTTCACTTCTCTTTTCTCCGCTGAAGAGTGCACCGGCGTGTTCCTTCTCTGGTGCAGCTTCTTCAGGTAAGGATGATATCAAGGTTGTCCTGGATATTCTCCTGAGGAAGAAGAAAAAGAACACTGTGATTGTAGGTGACTCTGTGTCATTAACTGAAGGCCTTGTGGGAGAGCTTATGAGAAGGGTAGAAAGGTCAGAAGTGCCTGACGAGTTAAAGTCAACCCGTTTTATCAAATTCCAGATTTCACCTGCTTCTTTGAGTTGCATGAAGAGAGATGAAGTTGAAATGAAGGTGCTGGAACTAAAAAGGAAGGTGAATTCCGTTGCATCAGGAGAAGGGGGTGGCATTTTTTACATTGGAGACCTGAAGTGGACCGTGGAGGAGGCAAGTCTCAGTGACAAAGAGGAAGGGTCCCCAGAAGGTTACAATCCAGTTGATCATTTAGTTTCAGAAATTGGAAGGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTTCTAGTTACCAAACATACATGAGATGTCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGACTTGAGTCTTCATGCTCCCAGTGTCCTTGACTCAAAGATGAGCATCACCCAAAATCAATCTCATGTGCCCGAAACAAAGCCCCTTGGTAACACGGAGCAGCAGGATAGGCTGAACTGTTGTGAAGAGTGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTTAAGCCAGATCAAAAGAAAATGATCCCATTCTGGCTTCAGTCTCATAGCACAGAAGACCATGATAAGGATGAATTAGTCAAGTTGAAAAGAAAGTGGAACAGACTGTGCCACTGTCTCCACCAAAGCAAACAGCTTCATAACCCATTGAACTGGAACAACAGTTATAATTCAGCAAGCTCCATATCTTTTGCGAACAATGCGACACATTGCTCCACCTCCAAACTTGTTCCTCGATTCCGGCGCCAACAATCATGCATTATTGAGTTCAATTTCGGCGACAAAAGGGAAGCAACAGAGGCAGTCTTAGATTCCCTGGAGGGCATGGAAGGTAAAGAAGTAAAGACTACTCTCGCTCTTGGCAATGGCGGTTCAGGTGAGACGGTGGGGGATATAACTGATGATAGAACACTGCAAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATCCATTCCAAATCAGCAAAGCAAAATAACAGTATTACTTGGTTACTAGTGAAAGGCAATGACATCATTGGGAAAAAAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAACTGATGTGCTCCTTCAATTTGACATGCTAAAGAGAGAGACTTCAGTGGCCCCATTTTCTGAAATGCTGGCAGGAGCGCTGAAAACCCACCAACAGCTTGCGGTGCTAATAGAAAATGTTGAATTTGCTGATGCCCAGTTCATGAAATTCCTCTCAGATGGGTTTGAAACAGGAAAGTTTGGAAATTTCACTGAAGAGAACTCAATCCAAGTGATTCTCATTTTGACAAGTGGTGGATCCACTAGCATTGAGGAGAAGAACGAGGATTCGGTTATCAAGCTGTCATGGGAGGTTAGTGAAACCAAGCCTAACTTAGAGACTCAATCTGTCGCAGCTAGGATTATAGAGCCTTATTTGGGCAACAAAAGAAGAGCTGAACTTGATTTGTTTTCTGACACCAAGAGTTTTCAAGGGAGCAAGAAGAAAGTGTGTTCGAGACAAACGAGCTTCAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGGTGATGGGGAGGGTAAAGAAGCGGAAAGTAATCCAATTTCAAGTGATTTGACTAAGGAAACTATAGCTGATCCACTTAGCCAAAACGGGTTTCTTGACTCCATTGAAAACCGGTTTGAGTTTAACACAAGTTCAGTTAAAGACAGAGAGATGGCAGAGTTGTTTTTGTGCAAGATAAAAGGGTCTTTTGAGGAGGTTCGTGGGAAACAATGTTGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTTTGTTTTGGGTGTGGTTATTTTACCAACAAGCTGTTTGAGAAATGGCTGAAAAAGGTTTTCCAAAGCAGTTTAAAAACAGTTAACTTTGGAGGGAAGGAGGGTATAGTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATACAAAAGCAGATAGTGGGTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAACTTAATTACTTCATAGAGTGA 3003 0.4489 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTAPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEHLITSILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSSSENHRETTTNPANFRQTHHFLTSYASEFHPSLLFSPLKSAPACSFSGAASSGKDDIKVVLDILLRKKKKNTVIVGDSVSLTEGLVGELMRRVERSEVPDELKSTRFIKFQISPASLSCMKRDEVEMKVLELKRKVNSVASGEGGGIFYIGDLKWTVEEASLSDKEEGSPEGYNPVDHLVSEIGRLFCDCGTSNNAKVWLMATSSYQTYMRCQMRQPPLEKQWALQAVPVPSGGLDLSLHAPSVLDSKMSITQNQSHVPETKPLGNTEQQDRLNCCEECASNYEKEAQFLKPDQKKMIPFWLQSHSTEDHDKDELVKLKRKWNRLCHCLHQSKQLHNPLNWNNSYNSASSISFANNATHCSTSKLVPRFRRQQSCIIEFNFGDKREATEAVLDSLEGMEGKEVKTTLALGNGGSGETVGDITDDRTLQRAHICKLLQENVPWQSETVPSIAEALIHSKSAKQNNSITWLLVKGNDIIGKKRLALAVAESVFGSTDVLLQFDMLKRETSVAPFSEMLAGALKTHQQLAVLIENVEFADAQFMKFLSDGFETGKFGNFTEENSIQVILILTSGGSTSIEEKNEDSVIKLSWEVSETKPNLETQSVAARIIEPYLGNKRRAELDLFSDTKSFQGSKKKVCSRQTSFNTLDLNMKADEEGDGEGKEAESNPISSDLTKETIADPLSQNGFLDSIENRFEFNTSSVKDREMAELFLCKIKGSFEEVRGKQCCWENLSVDERVIEDVCFGCGYFTNKLFEKWLKKVFQSSLKTVNFGGKEGIVFRLCWGGKGDTKADSGFMSSSLPKSIQLNYFIE 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05304 1000 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 967 - -
Viun3g05304 1000 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Viun3g05304 1000 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Viun3g05304 1000 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Viun3g05304 1000 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
Viun3g05304 1000 MobiDBLite consensus disorder prediction 838 864 - -
Viun3g05304 1000 Gene3D - 9 168 IPR036628 -
Viun3g05304 1000 Gene3D - 593 807 IPR027417 -
Viun3g05304 1000 MobiDBLite consensus disorder prediction 840 854 - -
Viun3g05304 1000 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05304 Viun-Chr3 59445431 59449621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05304 - - vra:106769441 1747.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05304 3 59445431 59449621 Viun3g05304 3 59445431 59449621 ECH
Viun3g05304 3 59445431 59449621 Viun9g00369 9 2570465 2574681 PCT