Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04675 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCATAGAGGGTGGTGGAGGTGGAAATGAGGTGTATGGACCAGGGAAAAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGACTTGGAGCCAACCCACTGTAAAAGGCTCCCCACCTACTCCTAGAGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACGGATGGGATGAACCCTCTCAAGGATTTGCACATACTGGACACTTCATTGCATACATGGGTTTCTCCCACCATAAGAGGAGAAGGGCCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAGTAATAATGAGGTCTACTACAATGATCTTTACATACTAAATACAGAGACATTTGTCTGGAAGTGTGCTACAACATCGGGCACTCCACCATCTCCTCGTGATAGCCACTCTTGTTCATCTTGGAAAAATAAAATTATTGTAATAGGAGGTGAAGATGGACATGATTATTACTTGTCTGATGTCCATATCCTTGATACTGATACTTTAATCTGGAGGGAGCTAAGTACATCAGGCCAATTGTTGCCTCCTCGAGCTGGTCATTCAACTGTTTCTTTTGGCAAGAACTTGTTCGTTTTTGGGGGATTTACAGATGCCCAAAATCTATATAATGACCTCTATATGCTTGATATTGACACTGGTGCTTGGACAAATGTTACATCTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGGGGTGTTCTTGTGTTCATAGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAATTGAAGTGCCAAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTAGCAAGATATGGTGTGGGTTCTGATATGGGCCAGATCATGTCAGTGTTGAATTATGGCCAGCAAAGTAGGCTAAATATCCCAGTAAACCATTCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATACTGTTTTTAAACAAGCCAAATTCTCTGTACTCAGCTGCTCATACTCCCAGTAGCAGGAAAAGGACTCTTGGTGAGATTGATAGTGTTCTCTCGAATGGTATACACTCTAACCAATTAAAGACTCCTAAAGTACTCAAGCAAAATCAAATGGAAAACCAAGAAGCATTTTGTGGAGACAGTTCAGAGTCTCATGAACACCGCACTGAATCCATTGCAGTGGTAATGTCAAGTAACCCAGTGACTGCCAATGCTCCTAATACCCATAAGGTTTCGGCCAACCTAGAACCAGAAGCATCTGCTTTGAATCAAAATGATGAAAAACATGAAACACCCATATCCTTAAGTGAAGACTTGAAAAAAGATGGCGCAAATGATGTGATATGTTCCAAAGATGAGGTGCAAACAAATGATCAAACAAATGGGCCAATTTCCAACTTTGAACTTACAAGACATGATACAAAATTTGATGCTCCAAATTACAACACTGAATTTCAGAAACCTGCTGCATCTGAAAGTGTTTTGTGCCTGTCAAATCAAGTGCAGTGGTGGATTCCACAACTCCAACAAGAGAATGCAGCGAAGCAGCAACATTAA 1875 0.4235 MRWEKVEVKAIGIEGGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPTVKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWVSPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADSNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGAWTNVTSATNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSQNQVLARYGVGSDMGQIMSVLNYGQQSRLNIPVNHSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSAAHTPSSRKRTLGEIDSVLSNGIHSNQLKTPKVLKQNQMENQEAFCGDSSESHEHRTESIAVVMSSNPVTANAPNTHKVSANLEPEASALNQNDEKHETPISLSEDLKKDGANDVICSKDEVQTNDQTNGPISNFELTRHDTKFDAPNYNTEFQKPAASESVLCLSNQVQWWIPQLQQENAAKQQH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04675 624 Pfam Kelch motif 128 172 - -
Viun3g04675 624 SUPERFAMILY Galactose oxidase, central domain 24 246 IPR011043 -
Viun3g04675 624 SUPERFAMILY Galactose oxidase, central domain 210 317 IPR011043 -
Viun3g04675 624 Pfam Galactose oxidase, central domain 186 231 - -
Viun3g04675 624 Pfam Galactose oxidase, central domain 237 283 - -
Viun3g04675 624 Gene3D - 2 151 IPR015915 GO:0005515
Viun3g04675 624 Pfam Galactose oxidase, central domain 40 89 - -
Viun3g04675 624 Gene3D - 154 401 IPR015915 GO:0005515
Viun3g04675 624 SMART kelc_smart 92 141 IPR006652 GO:0005515
Viun3g04675 624 SMART kelc_smart 249 295 IPR006652 GO:0005515
Viun3g04675 624 SMART kelc_smart 41 91 IPR006652 GO:0005515
Viun3g04675 624 SMART kelc_smart 198 248 IPR006652 GO:0005515
Viun3g04675 624 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 159 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04675 Viun-Chr3 54142565 54149253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04675 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 29.603 9.46e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04675 - - gmx:100803752 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04675 3 54142565 54149253 Viun3g04675 3 54142565 54149253 ECH
Viun3g04675 3 54142565 54149253 Viun9g00826 9 6147872 6154061 PCT