Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04510 ATGAAAAGAGGGAGAATAGGGAAGTTAGATACTCTTCTCTCATTCACCAGACAACGATCCACTCAAATTTTCATCGTTCTTGGCCTCTTCTACATTCTCTTCGTCTTCCTCGAGATACCCTTCGTCTTCAGAACCGCTCAAGAACAACCGTCTCGCCTCCCGCCGCTCGTTCGCCCCCCAAACGGCGTCGTCTCCGGTTTGACCCTAAACGACGCCGCATTTGATTCCTCCCTCTACCAATCCGCCTGCCGCGTCGGCAGGGCTATTTGGGCCGAACTTAAATCAGGCAAAGCGCAGGGCCCCGTTTCCAAGCCCGATAACCAATCCAGACCATGCCCCGGATCCATATCGGTATCCGGACCCGTATTTTTCAGCCGCGGGAGGTCCATGGTGATTCCCTGTGGCCTCACGTTAGGGTCCCATTTAACGGTGGTTGGGGAGCCGTTAAAACCGCAACGGAGGAAGTGTCAGTTTATGATGGAGTTGCAGGGGCTGACGACGGTGGAGGGTGAAGAACCACCTAGGGTCTTACATTTCAATCCTAGGTTGAAAGGGGATTGGAGTGGAAAGCCCGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCAATGCGCTGTGATGGTTGGAAATCCAGAGCTGGGGAAGATACTGTTGATGGGTTGGTGAAATGTGAGAAGTGGATTCGGGGTGATGATGATGATGATGGTGACACTGACAGACATGCAGTGGAGTCCAACGCAGAGTGGTGGTTGAAGAGATTGATTGGTCGGACAAAACGAGTACCAATTGATTGGCCATTTCCATTTTCTGTGAACAAGCTATTTGTTCTTACTCTCAGTGCTGGGTTGGAGGGTTACCATGTTCATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGCTTTGCTCTTGAGGATGCCACTGGTCTTATCTTGAGTGGGGACATTAGTGTCCGTTCTGTATTTGCTGCCTCTTTGCCCTCGGTGCATCCCAACATTTCCTCGCAGCAGCAGCTAGAATTTTCAACCAGATGGCGTGCCCCAAGTCTTCCTCACTTTGGCGTGGAATTGTTTGTTGGGATCCTTTCAGCCGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTAATCAAATCTTCGAAAGTGGTGGCTCGCTTCTTTGTAGCACTGAACCCGAGGAAGGAAATTAACGTGGAGTTGAAGAAGGAGGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATGGATAACTATGACCTTGTTGTGCTCAAAACGGTGGCCATCTGTGAATACGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAGGGAGATGATGACACTTTCATAAAAGTTGATGATGTTATTACTCGAGTAAGGAATGTTCCATATTCTATGAGCTTTTATATCGGGAACATCAATTACCGCCACAGACCCATGCGCCATGGTAAATGGGCCGTGACATATGAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCTAATGGACCGGGTTATATTTTGTCTTCTGATATTGCAAGCTACATTCTATCTGAATTCGAGAAGCATAAATTAAGGTTGTTTAAAATGGAAGATGTGAGTATGGGAATGTGGGTAGAACAATTTAACAGAACGAAACCAGTATACTATTTTCATAGCTTGAGGTTCTGCCAGTTTGGTTGTGTAGAAGGCTATATCACTGCCCATTACCAATCGCCTAGGCAGATGATATGCCTGTGGGAGAAATGGCAGATGCAGACAATTCCTGAGTGCTGCAACATGAGATAA 1827 0.4773 MKRGRIGKLDTLLSFTRQRSTQIFIVLGLFYILFVFLEIPFVFRTAQEQPSRLPPLVRPPNGVVSGLTLNDAAFDSSLYQSACRVGRAIWAELKSGKAQGPVSKPDNQSRPCPGSISVSGPVFFSRGRSMVIPCGLTLGSHLTVVGEPLKPQRRKCQFMMELQGLTTVEGEEPPRVLHFNPRLKGDWSGKPVIELNTCYRMHWGTAMRCDGWKSRAGEDTVDGLVKCEKWIRGDDDDDGDTDRHAVESNAEWWLKRLIGRTKRVPIDWPFPFSVNKLFVLTLSAGLEGYHVHVDGRHVTSFPYRTGFALEDATGLILSGDISVRSVFAASLPSVHPNISSQQQLEFSTRWRAPSLPHFGVELFVGILSAGNHFAERMAVRKSWMQHSLIKSSKVVARFFVALNPRKEINVELKKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFIKVDDVITRVRNVPYSMSFYIGNINYRHRPMRHGKWAVTYEEWPEEEYPPYANGPGYILSSDIASYILSEFEKHKLRLFKMEDVSMGMWVEQFNRTKPVYYFHSLRFCQFGCVEGYITAHYQSPRQMICLWEKWQMQTIPECCNMR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04510 608 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 128 329 IPR001079 GO:0030246
Viun3g04510 608 SMART Gal_bind_lectin_2 132 328 IPR001079 GO:0030246
Viun3g04510 608 Pfam Galactosyltransferase 375 554 IPR002659 GO:0006486|GO:0016020|GO:0016758
Viun3g04510 608 FunFam Hydroxyproline O-galactosyltransferase GALT2 243 327 - -
Viun3g04510 608 CDD GLECT 132 327 IPR001079 GO:0030246
Viun3g04510 608 Gene3D - 357 606 - -
Viun3g04510 608 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 296 558 IPR002659 GO:0006486|GO:0016020|GO:0016758
Viun3g04510 608 Gene3D - 243 327 - -
Viun3g04510 608 Pfam Galactoside-binding lectin 129 327 IPR001079 GO:0030246
Viun3g04510 608 FunFam Hydroxyproline O-galactosyltransferase GALT6 128 221 - -
Viun3g04510 608 Gene3D - 127 221 - -
Viun3g04510 608 FunFam Hydroxyproline O-galactosyltransferase 353 596 - -
Viun3g04510 608 SUPERFAMILY Concanavalin A-like lectins/glucanases 130 327 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04510 Viun-Chr3 52866924 52872446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04510 2 608 Glycosyltransferase AT1G74800 58.333 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04510 K20843 - gmx:100800292 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04510 3 52866924 52872446 Viun3g04510 3 52866924 52872446 ECH
Viun3g04510 3 52866924 52872446 Viun9g01124 9 9406787 9410298 PCT