Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04427 ATGGCCACCCAATCGCCGCCGCCTTCCACTTCCACCGCCACGGACGAAAACCCAGGTTCTGAGATTGCGCAACCAGCAAATATGGATCAGCAAAACACCAGAGAAGCAGAGCCCGCTAAACCTAGTTCAACTCCATCAGTATTTGTAAACTCCCAACCGATGAGGGAAGAACAAGTTCAGAATGCTGTGAAATTTCTGTCTCACCCAAAAGTTAGAGGTTCACCTGTCATGTATAGGCGATCATTTTTAGAGAAGAAGGGCCTTACAAAGGAGGAGATTGATGAAGCATTTCGGCGAGTGCCAGATTCAGCTCCAACTGTGCAGACAGGCGGTGTAAATCAAGATGGGCAACTGAAATCATCATCAAACAATCAGCAACAAACTCAGCTAAAAACATTGCAGCCGGTTTCACCTGCTTCTACTGGTGTTAATACTTCATCTGGAACATTACCACGGTCAAGATTTCACTGGTCCCATGCCCTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAAATCTCTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCCTTGACAATGATGATGAAGAATTGAAGAAAAGTGATGACAAACCAACATTGATGGAAGAAGCTGCACAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCCGAAGTGGCAAAAGTGAGCCAAGAAATTCTAGCTTCAAAAGAGAGGAGATACTTTGTGGATGTTGTGAGCCTTTTAGACAAGCAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGATTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCAAAGCAACTGATTGTGAATGGCAAAGCGGATTATGACATGCGTTCAGTGAGATCTTCATCTCCACCTGCATCTGTTCAACCATCAAGTGGTCTTCATCCAAAGTCATATATGGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGCCTTCTAATACTAGACCTTGGGAGGTTGGTCAGGTGCAAAACACGTCTACTCAGATTCTTCAATCTCAAGTAAATGGTGAAGACCTGAATACCAAGACCCAGGATACGTCTCTAGTAAATGGGGATGACCCATTGCCCTGGTGGCAGAAGAAAAATGTGAGAATCACAGAGATTGACAATGAAAATGGGTCTAATGGAGTACCTTATGCTGCTGCAACCAGTCAGCAACCAGTTCAACGTGTATGGGTTCCTCCTCAACCTCCACCCATAGCTATGCCTGGAGCTGCAGAAGCAATCAGACGCCCAAAGCAGGTGGCCCAAAAGGAACAGAAGTCAGATAATCAGTCAGTGGCTCAATCTTCTGACACCTCTGATGACGTTCAAGGGGTCTCAAAACCATTGGAATCTGAAGGTGCAGTAGAGAGCAGCAATGTCAGCTCAGTTCCGAGCTCCAATGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA 1488 0.4476 MATQSPPPSTSTATDENPGSEIAQPANMDQQNTREAEPAKPSSTPSVFVNSQPMREEQVQNAVKFLSHPKVRGSPVMYRRSFLEKKGLTKEEIDEAFRRVPDSAPTVQTGGVNQDGQLKSSSNNQQQTQLKTLQPVSPASTGVNTSSGTLPRSRFHWSHALIAVGLLAASGAGTAIIIKKSLLPRLKSWIRKVVLDNDDEELKKSDDKPTLMEEAAQAAKSAAAAAAEVAKVSQEILASKERRYFVDVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDMRSVRSSSPPASVQPSSGLHPKSYMEIMAMVQRGEKPSNTRPWEVGQVQNTSTQILQSQVNGEDLNTKTQDTSLVNGDDPLPWWQKKNVRITEIDNENGSNGVPYAAATSQQPVQRVWVPPQPPPIAMPGAAEAIRRPKQVAQKEQKSDNQSVAQSSDTSDDVQGVSKPLESEGAVESSNVSSVPSSNEIQEEHEVKYDEK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04427 495 Coils Coil 252 272 - -
Viun3g04427 495 Gene3D - 47 109 IPR036388 -
Viun3g04427 495 MobiDBLite consensus disorder prediction 439 460 - -
Viun3g04427 495 MobiDBLite consensus disorder prediction 467 483 - -
Viun3g04427 495 MobiDBLite consensus disorder prediction 389 495 - -
Viun3g04427 495 MobiDBLite consensus disorder prediction 389 410 - -
Viun3g04427 495 MobiDBLite consensus disorder prediction 97 149 - -
Viun3g04427 495 MobiDBLite consensus disorder prediction 106 149 - -
Viun3g04427 495 Pfam Pex14 N-terminal domain 55 99 IPR006785 -
Viun3g04427 495 MobiDBLite consensus disorder prediction 1 55 - -
Viun3g04427 495 FunFam Peroxisomal membrane protein PEX14 47 109 - -
Viun3g04427 495 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 489 IPR025655 GO:0005515|GO:0005778|GO:0016560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04427 Viun-Chr3 52047419 52056701 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04427 K13343 - gmx:100784152 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04427 3 52047419 52056701 Viun3g04427 3 52047419 52056701 ECH
Viun3g04427 3 52047419 52056701 Viun9g01207 9 11286584 11301641 PCT