Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04421 ATGGCGCACACAGGTAACAGTTCAATGCACGGGTCGAGTTCACGGCCTCAATTGTTGGATCTCAGCAAAGCAGAAATTCAAGGAAACGAGGAAGAGAAGTATCCATCTATTTTGTTACCCAATCAGTCTCATGATATATCGTACCTCGCTCTTGACATTGGAGGATCTCTTATAAAGTTGGTGTACTTTTCAAGACACCAAGATCAATCGACCAATGATAAAAGGATGAGAAATGTTAAGAATCGTTTGGGATTTCCCAGTAACAGGAGAAGCTATCCTATTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACTCGGAAGATTAGCGAGTGCTTAGACTTCATTTATTCAAAAAAGCTTCACTTCGGTGGAGGGGAATCTCGTTACTCTGATGGCTCAACTGAATTAAATGCCATAATTAAGGCTACTGGTGGTGGAGCACACAAATTTGCCGACCTCTTCAAAGAAAGACTTGGACTTATTCTTGACAAAGAAGATGAAATGAGCTGTCTTGTGGCAGGGGCAAATTTCTTGCTGAAGGCGATTCGCCATGAAGCTTTTACGCACATGGAGGGGCAGAAAGAGTTTGTTCAAATTGACCCTAATGATTTGTTTCCATATCTTCTAGTTAATATTGGATCTGGTGTTAGCATGATCAAGGTTGATGGGGATGGAAAATTTGAGAGGATCAGTGGGACTAATGTTGGTGGTGGTACTTATTGGGGCTTGGGCAGGCTGTTAACAAAGTGTGAGAGCTTTGATGAATTACTTGAGCTGAGTCAGAAAGGAGATAATAGAAATACTGACATGCTTGTTGGGGACATTTATGGTGGCATGGACTATGCTAAGATCGGCTTATCAGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCTACCTCAGAAAAAAAGGGGCTCGAAGATTACAGACCTGAAGATATATCACTCTCTCTTCTGCGAATGATATCATACAATATTGCCCAAATAGCGTACTTAAATGCATTGCGATTTGGGTTGAAGAGAATATTTTTTGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGATGCTATTTCTTTTGCAATTCATTTCTGGTCTAATGGGGCTGCACAAGCAATGTTTTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTACGAAAAGCATGGTTTAGATGATCTCATGGTGCATCAATTAGTTGAAAGATTCCCAATGGGTGCTCCATATACGGGAGGCAATATTCATGGTCCCCCACTTAGGGATTTGAATGAGAAGATTTCTTGGATGGAGAAGTTTCTGCAGAAGGGAACTGAGATCACTGCCCCTGTGCCAATGACTCGTCCTGGCACCACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCGAAAGGAAGTATTCTGCGGTCTGATGCTAGCGCTCTAAATGTTGGTGTCCTTCATCTAGTACCCACTTTAGAGGTGTTTCCATTATTAGCAGACCCGAAAATATATGAACCTAATACCATTGATCTCTCAGATCACAGTGAACTAGAGTATTGGTTCAAAATTTTATCGGAGAACTTGCCTGATCTTGTGGCCAAGGCCGTCGCAAGTGAAGGTGGGACTGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGACTAGGTTAATGGAGGAACCTGCTGCATACGGCAAGTTAGGCCTGGCCAGACTACTGGAAATGAGGGAAGAGTGCCTGAGGGAATTCCATTTTTTTGATGCTTATATAAGTATAAAGCAGAGGGAAAATGAGGCATCAATTGCAGTCTTACCTGATTTGTTGATGGAGCTTGATAGTCTGGATGAGGAAACAAGACTACTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGATCTCGTGCATGTGTGGATCTCTATAATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAACAAAATGCAGAGACCCTGGCGAGTGGATGACTTTGATGTCTTTAAGGAGAGAATGTTAGGAACTGGGGACAAGAAACCACCCCCACATAAAAGAGCTTTACTTTTTGTGGATAATTCAGGTGCTGATATTGTTCTTGGGATGCTTCCCCTGGCACGAGAACTCCTCCGTCGTGGAACTGAAGTGGTCCTGGTTGCAAATTCCCTTCCTGCTTTGAATGATGTGACTGCAATGGAGCTTCCGGACATTGTTGCCGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGTGGCTTGCTTGTTGATGCAATGAGTACTACCTTGGACAGTCCTAGAGGAAATTCGTCTTCCGTTCCCTTGATGGTTGTTGAGAACGGATGTGGTAGCCCTTGTATAGACTTTAGACAGGTCAGCTCTGAGCTGGCAGCTGCTGCAAAAGATGCCGATTTGGTAATTTTGGAAGGGATGGGTAGAGCTCTTCATACCAATCTCAATGCGCGGTTTAAGTGTGATGCTTTGAAGCTTGCAATGGTGAAAAATCAGAGATTTGCTGAAAAGCTGATTAAAGGGAACATATACGACTGTATCTGTAAATACGAGCCAGCTAACTGA 2604 0.4309 MAHTGNSSMHGSSSRPQLLDLSKAEIQGNEEEKYPSILLPNQSHDISYLALDIGGSLIKLVYFSRHQDQSTNDKRMRNVKNRLGFPSNRRSYPILGGRLHFVKFETRKISECLDFIYSKKLHFGGGESRYSDGSTELNAIIKATGGGAHKFADLFKERLGLILDKEDEMSCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERISGTNVGGGTYWGLGRLLTKCESFDELLELSQKGDNRNTDMLVGDIYGGMDYAKIGLSASTIASSFGKATSEKKGLEDYRPEDISLSLLRMISYNIAQIAYLNALRFGLKRIFFGGFFIRGHAYTMDAISFAIHFWSNGAAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGNIHGPPLRDLNEKISWMEKFLQKGTEITAPVPMTRPGTTGLGGFEVPLSKGSILRSDASALNVGVLHLVPTLEVFPLLADPKIYEPNTIDLSDHSELEYWFKILSENLPDLVAKAVASEGGTDDAKRRGDAFARAFSAHLTRLMEEPAAYGKLGLARLLEMREECLREFHFFDAYISIKQRENEASIAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSRACVDLYNKGTIIEIYRMSRNKMQRPWRVDDFDVFKERMLGTGDKKPPPHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLLVDAMSTTLDSPRGNSSSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADLVILEGMGRALHTNLNARFKCDALKLAMVKNQRFAEKLIKGNIYDCICKYEPAN 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04421 867 SUPERFAMILY Actin-like ATPase domain 47 186 IPR043129 -
Viun3g04421 867 SUPERFAMILY Actin-like ATPase domain 159 391 IPR043129 -
Viun3g04421 867 FunFam Pantothenate kinase 1 48 185 - -
Viun3g04421 867 NCBIfam type II pantothenate kinase 49 390 IPR004567 GO:0004594|GO:0005524|GO:0015937
Viun3g04421 867 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 668 865 - -
Viun3g04421 867 PANTHER PANTOTHENATE KINASE 22 757 IPR004567 GO:0004594|GO:0005524|GO:0015937
Viun3g04421 867 Pfam Fumble 49 389 IPR004567 GO:0004594|GO:0005524|GO:0015937
Viun3g04421 867 Gene3D - 504 588 IPR035073 -
Viun3g04421 867 FunFam Pantothenate kinase 2 503 589 - -
Viun3g04421 867 Gene3D - 41 199 - -
Viun3g04421 867 Pfam Damage-control phosphatase ARMT1-like domain 575 853 IPR002791 -
Viun3g04421 867 FunFam Pantothenate kinase 2 271 380 - -
Viun3g04421 867 FunFam Pantothenate kinase 2 40 199 - -
Viun3g04421 867 PIRSF PanK_long 1 867 IPR015844 GO:0004594|GO:0015937
Viun3g04421 867 SUPERFAMILY AF1104-like 483 865 IPR036075 -
Viun3g04421 867 Gene3D - 270 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04421 Viun-Chr3 51979917 51995285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04421 K24265 K09680 gmx:100783082 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04421 3 51979917 51995285 Viun9g01216 9 11460518 11482977 ECH
Viun3g04421 3 51979917 51995285 Viun3g04421 3 51979917 51995285 ECH
Viun3g04421 3 51979917 51995285 Viun9g01216 9 11460518 11482977 PCT