Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04290 ATGGCAATGGCAACAATGGGAGAGAGTCCTCGGAGCCCAGAAGCGAAATTGGGTATGCGAGTTGAGGATCTTTGGGACGTTCAAGAGGCACAACTAAGTCCTACCGAGAAGCTCAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCGTTTCCTTTGGCTCCTTCAAACCAAGAGATTGAGATCAAATCAGACGCCACGTTGGCCGAAGCTGTTATGAAACTGGCACGACACAACGTTTTCAGTGCACCTGTGGTGGATGTTGATGCTCCTGAAGATGCTAGTTGGATTGACAGATACATCGGAATTGTCGAGTTTGCTGGGATTGTTGTATGGATCTTGCATCAGTCTGAACCTGCATCTCCAATGAGTCCTTCTACTCCAACCAGTGCAAAGGCTATTGCAGCTGCAGCTAATGGACTGAGTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTGCAGGAAACTTTTTTTTGGATCTTACTTCATCTGAACTTTATAAGAATACCACGGTTCGTGACATTGCAGGGACATTCCGCTGGGCCCCATTTCTTGCTTTGGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCGAAGTACAAGATGAAGAGTGTCCCTGTGTTGGATTTAGGCTCTGGTACAATCGATAAGATTATTTCACAATCTGCCGTGATTCATATGCTGGCAGAATGCGCTGGACTTCAGTGGTTTGAAAGTTGGGGAACCAAGAAAATATCTGAAGTTGGTCTTCCCCTGGTTACACCAGATCAGATCATAAAGGTTTATGAGGATGAACCAGTCCTTCAAGCATTTAAAGTAATGAGAAAAAAGAGGGTTGGAGCGGTGCCTGTAATTGAGAGAGATAGCGGAAAGGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAAATGCTCCGGAAATATACCATGATTATAGAGCTATTACAGTAAAGGATTTCCTGACAGCGGTTAGAAGTTACTTGGAGAAGAACAAAAACGCGTTCCCAATGGTAAGTGAATATGTTACATGCAGAGAGGACTGTACAATCAAAGAGTTGATTCAACTGCTGGATCAAGAGAAGATTCATAGGGTGTATGTGGTGGACAATGATGGGGATCTGCAAGGACTAATCACACTAAGAGACATCATCTCAAGACTAGTACACGAACCCCGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTTCCTCTGCCTGCAAATACCAGAGTTTAA 1263 0.4402 MAMATMGESPRSPEAKLGMRVEDLWDVQEAQLSPTEKLNACFESIPVSAFPLAPSNQEIEIKSDATLAEAVMKLARHNVFSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPASPMSPSTPTSAKAIAAAANGLSFALELEALGLGSAATTAGNFFLDLTSSELYKNTTVRDIAGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVLDLGSGTIDKIISQSAVIHMLAECAGLQWFESWGTKKISEVGLPLVTPDQIIKVYEDEPVLQAFKVMRKKRVGAVPVIERDSGKAVGNISLRDVQFLLNAPEIYHDYRAITVKDFLTAVRSYLEKNKNAFPMVSEYVTCREDCTIKELIQLLDQEKIHRVYVVDNDGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04290 420 CDD CBS_pair_SF 263 393 - -
Viun3g04290 420 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Viun3g04290 420 ProSiteProfiles CBS domain profile. 260 321 IPR000644 -
Viun3g04290 420 Pfam CBS domain 346 397 IPR000644 -
Viun3g04290 420 Pfam CBS domain 264 308 IPR000644 -
Viun3g04290 420 CDD CBS_pair_SF 201 308 - -
Viun3g04290 420 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Viun3g04290 420 Gene3D - 249 399 IPR046342 -
Viun3g04290 420 SUPERFAMILY CBS-domain pair 249 406 IPR046342 -
Viun3g04290 420 SUPERFAMILY CBS-domain pair 30 236 IPR046342 -
Viun3g04290 420 Gene3D - 35 240 IPR046342 -
Viun3g04290 420 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 48 396 - -
Viun3g04290 420 SMART cbs_1 264 313 IPR000644 -
Viun3g04290 420 SMART cbs_1 349 397 IPR000644 -
Viun3g04290 420 SMART cbs_1 57 113 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04290 Viun-Chr3 50633123 50635998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04290 - - gmx:100812388 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04290 3 50633123 50635998 Viun3g04290 3 50633123 50635998 ECH
Viun3g04290 3 50633123 50635998 Viun9g01473 9 17579180 17582616 PCT