Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04256 ATGGGCTTCCCAGCCAACGGCGCCTCAGCGGACCACCCAATCAAGTTCCTTATCTACGGCCGTACGGGCTGGATTGGTGGTCTCCTCGGCACCCTCTGCCAGGCCCAAGCCATCCCCTTCCAGTATGCCTCGGGCCGTCTCGAGGACCGGGCCTCCCTCGAAAAGGACATAGCTGAGGTCAAGCCCACCCACGTATTCAACGCCGCCGGTGTCACGGGCCGCCCCAACGTCGACTGGTGCGAGTCCCACAAGGTCGAGACAATCCGAACCAACGTCGTCGGAACCCTCACTCTCGCCGACGTCTGCCGCCAACACGGCCTCCTCCTCCTCAACTACGCCACCGGTTGCATCTTCGAGTACGATTCCGCTCATCCTCTCGGATCCGGAATCGGCTTCAAAGAAAACGACACTCCCAATTTCACCGGTTCCTTCTACTCTAAGACCAAGGCCATGGTAGAGGATCTGCTTAAGAACTACGATAATGTGTGTACCTTGCGAGTGAGGATGCCTATCTCGTCTGATTTATCGAATCCACGCAATTTCATCACGAAGATCACTCGATACGAGAAGGTTGTGGATATTCCAAATTCCATGACTATATTGGATGAACTTCTTCCCATTTCGATTGAGATGGCGAAGAGGAATCTGACCGGGATCTGGAACTTCACAAACCCTGGAGTGGTTAGTCACAATGAGATTCTAGAGATGTACAGAGAGTATGTTGACCCCAACTTCACCTGGAAGAACTTCACTCTTGAGGAACAGGCGAAGGTGATTGTTGCCCCCAGAAGCAACAATGAGCTTGATGCCACCAAATTGAAGACGGAATTTCCAGAACTGCTGTCTATCAAGGACTCTCTCGTCAAGTATGTCTTCCACCCCAACCAGAAAGTTAAAGCTTAA 903 0.5249 MGFPANGASADHPIKFLIYGRTGWIGGLLGTLCQAQAIPFQYASGRLEDRASLEKDIAEVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQHGLLLLNYATGCIFEYDSAHPLGSGIGFKENDTPNFTGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYREYVDPNFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELLSIKDSLVKYVFHPNQKVKA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04256 300 Gene3D - 6 300 - -
Viun3g04256 300 CDD dTDP_HR_like_SDR_e 15 287 - -
Viun3g04256 300 Pfam RmlD substrate binding domain 15 187 IPR029903 -
Viun3g04256 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 291 IPR036291 -
Viun3g04256 300 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 15 297 IPR005913 -
Viun3g04256 300 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 5 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04256 Viun-Chr3 50267382 50268746 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04256 K12451 - gmx:100781643 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04256 3 50267382 50268746 Viun3g04256 3 50267382 50268746 ECH
Viun3g04256 3 50267382 50268746 Viun2g02524 2 31499385 31500853 PCT