Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04253 ATGGACCGCTCCGCCGCCAGACTCAATGTTCCTGCGCCGGTAGCCTCCGGACCCTCTGCGGAGGCCACTCTACGCCACGTGGACCGCCTCATAAACTCCAATCACTACACGTCGCCTTCCAGGACAATTTACTCCGACCGCTTTATTCCCAGCAGATCTGCGTCGAAATTCGCGCTCTTCGACATCGCCTCGCTACCCGAGGGCCGTGATGACAGCTCCAGTGCCTACACCACGCTCCTCCGCACCGCCCTCTTCGGCCCCGATGCCGCCGGCCTAGCGCCGCCCCTCACGCCGCAGAAAACGGCCTCGCCGCCCATGACGCTTCCCAGCCGGAATATTTTCCGGTACAAGACCGAGACGCGCCAGTCCATGCACTCGCTCTCGCCGTTCATGTGCGACGATTCCGTACCCGGAGTTAATCACGGCCCGGTCAAGGCTCCCAGGAAGGTTCCCAGGTCGCCTTTTAAGGTCCTGGATGCGCCTGCGCTGCAAGATGATTTTTACCTGAATCTAGTGGATTGGTCTTCGCATAATGTATTGGCTGTTGGTCTGGGTAACTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGATTTGGGGATTGATGACCTCGTTTGTTCCGTAGGCTGGGCTCAACGTGGTACGCACCTTGCGGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCTTCTCGTTGCAAGAAGATAAGGTCTATGGAGGGTCATCGGTTACGTGTTGGAGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGCGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGACGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTATGGAATCAACACTCAACTCAGCCTGTCCTCAAGTACTGCGAACATACAGCTGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGATCGATGCATACGTTTCTGGAATACTACCACCAACTCACACCTAAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTCGTGTGGTCTAAAAATGTCAACGAACTAGTAAGCACACATGGTTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACAATGTCAAAGCTGGCCACTCTTACTGGCCACACATACAGAGTTCTCTATCTTGCCATTTCTCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCATCCCCTAAATCACAGAATACTGACAATGAAATCGGAGCATCATCTCTTGGAAGAACTATTATTAGGTGA 1422 0.5063 MDRSAARLNVPAPVASGPSAEATLRHVDRLINSNHYTSPSRTIYSDRFIPSRSASKFALFDIASLPEGRDDSSSAYTTLLRTALFGPDAAGLAPPLTPQKTASPPMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVNHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDNEIGASSLGRTIIR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04253 473 SMART WD40_4 195 235 IPR001680 GO:0005515
Viun3g04253 473 SMART WD40_4 151 192 IPR001680 GO:0005515
Viun3g04253 473 SMART WD40_4 409 448 IPR001680 GO:0005515
Viun3g04253 473 SMART WD40_4 238 275 IPR001680 GO:0005515
Viun3g04253 473 SMART WD40_4 321 363 IPR001680 GO:0005515
Viun3g04253 473 SMART WD40_4 279 318 IPR001680 GO:0005515
Viun3g04253 473 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Viun3g04253 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 318 - -
Viun3g04253 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 449 - -
Viun3g04253 473 Gene3D - 144 453 IPR015943 GO:0005515
Viun3g04253 473 Pfam Anaphase-promoting complex subunit 4 WD40 domain 206 259 IPR024977 -
Viun3g04253 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 244 IPR001680 GO:0005515
Viun3g04253 473 FunFam FIZZY-related 2 isoform 1 151 451 - -
Viun3g04253 473 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 34 467 IPR033010 GO:0010997|GO:0097027|GO:1904668
Viun3g04253 473 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Viun3g04253 473 Pfam WD domain, G-beta repeat 323 363 IPR001680 GO:0005515
Viun3g04253 473 Pfam WD domain, G-beta repeat 283 318 IPR001680 GO:0005515
Viun3g04253 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 327 IPR001680 GO:0005515
Viun3g04253 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 449 IPR001680 GO:0005515
Viun3g04253 473 SUPERFAMILY WD40 repeat-like 163 449 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04253 Viun-Chr3 50214853 50221948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04253 222 451 Miscellaneous Gene Families AT5G08390 21.459 6.67e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04253 K03364 - gmx:100780928 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04253 3 50214853 50221948 Viun3g04253 3 50214853 50221948 ECH
Viun3g04253 3 50214853 50221948 Viun2g02517 2 31445692 31452651 PCT