Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02517 ATGGACGAATCGTTCACTCCACCTCCTCCAATGTCCTCTTCTCAGCACAACCATGTCAAACGAATGCTAGATTCCAATCGCTTCAAATCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCCAGCAGATCCGCTTCCAATTTCGCTCTGTTTAACCTAACGCCGTCCACGGAAGACGGTTGTAGTTGCAGCCCCTATGGCAGTGCGCTACGGAGTGCCTTGTTTGGACCTTCCACACCCAACAAATTCGAAAGCCCTAATATATTTCGTTTCAAATCGGAGACTCGACAGTCCATGCACTCTCTTTCTCTCACTCCTTTTACTTCCCAAGATGTCCTTCTCCCTGGCTATGACTACAATCATAAGCCTCTTAAGCGACCTCGAAAGATCCCTCCTTCGTCTTTTAAGGTTCTGGATGCGCCGGCTCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCGCCAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAGCTATGCGATTTGGGGGTTGATGACTCCGTTTGTTCAGTTGGCTGGGCTCCGCTTGGTACTTACTTGGCTGTTGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGATTACGTGTTGGGACCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTAGCCGGGATAAAAACATTTACCAACGAGACATACGTGTACAGGAGGACTTTGTCAGTAAACTGTCTGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCCTATGATAACCGTGAGTTAGCATCCGGTGGAAATGATAACAAGCTACTTGTTTGGAATCAAAACTCCACCCAGCCCATCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATTCAAGTGGACTTCTTGCATCTGGAGGAGGTACTGCAGACCGAAGCATTCGTTTCTGGAGTACTACCACAAACTCACCGTTAAACTGCATTGATACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTAAATGAATTGGTGAGCACGCACGGCTACTCCCAGAATCAGATAATGGTTTGGAAATATCCCACCATGTCAAAGCTGGCAACTCTTACAGGCCACACTTACAGAGTTCTTTATCTTTCCATTTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACCCTAAGATTTTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCTTCTTTTGGAAGATCCATCATCAGGTGA 1365 0.4586 MDESFTPPPPMSSSQHNHVKRMLDSNRFKSPSKTIYSDRFIPSRSASNFALFNLTPSTEDGCSCSPYGSALRSALFGPSTPNKFESPNIFRFKSETRQSMHSLSLTPFTSQDVLLPGYDYNHKPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSASNVLAVALENSVYLWNASSSKVTKLCDLGVDDSVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGTLAWSSSLLSSGSRDKNIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCEHTAAVKAIAWSPHSSGLLASGGGTADRSIRFWSTTTNSPLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHTYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRSIIR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02517 454 FunFam FIZZY-related 2 isoform 1 132 432 - -
Viun2g02517 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Viun2g02517 454 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Viun2g02517 454 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Viun2g02517 454 Pfam WD domain, G-beta repeat 304 344 IPR001680 GO:0005515
Viun2g02517 454 SUPERFAMILY WD40 repeat-like 145 438 IPR036322 GO:0005515
Viun2g02517 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 161 240 IPR024977 -
Viun2g02517 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Viun2g02517 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Viun2g02517 454 Gene3D - 125 433 IPR015943 GO:0005515
Viun2g02517 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Viun2g02517 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 176 216 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 260 299 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 219 256 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 302 344 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 347 387 IPR001680 GO:0005515
Viun2g02517 454 SMART WD40_4 390 429 IPR001680 GO:0005515
Viun2g02517 454 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Viun2g02517 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 20 449 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02517 Viun-Chr2 31445692 31452651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02517 254 430 Miscellaneous Gene Families AT5G08390 25.281 2.01e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02517 K03364 - gmx:100785726 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02517 2 31445692 31452651 Viun2g02517 2 31445692 31452651 ECH
Viun3g04253 3 50214853 50221948 Viun2g02517 2 31445692 31452651 PCT