Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04179 ATGCACAAGAGCGCTTCAGGTTCCACGTTGGGCCCGGGGGGCCTCGACCTAACCCAGGCCTTCTTCAAGCCCATCGCCAACGCTGACCCTCCCTCTACCACCAAGCAACACAACAAGATCTCCGTCATCGGAGTTGGTAACGTCGGAATGGCCATCGCTCAGACCATCCTCACCCAGGACCTCACCGACGAGCTCGTCCTCGTCGATACCAACGCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCCACGCCTCCACTGACTCTTCCATCACTGCCGGCTCCGATCTCTGCATCGTCACCGCCGGCGCCCGCCAAATCGCCGGTGAGTCCCGCCTCAACCTGCTCCAGCGGAACCTTTCCCTCTTCCGCGCCATCATACCCCCGCTTGTTCGTCACTCCCCCGCCACCACTCTCCTCATCGTTTCCAACCCTGTCGACATCCTCACCTACGTCGCCTGGAAGCTTTCCGGTTTCCCCTCCAACCGGGTCATTGGGTCGGGCACCAATTTGGACTCCTCTCGCTTCCGTTTCCTCATCGCCGATCACCTCGACGTCAACGCCCAGGACGTACAGGCTTATATTGTAGGAGAGCATGGAGATAGTTCGGTGGCATTGTGGTCTAGCATTAGCGTTGGGGGTGTTCCAGTGCAGTTTTTGGAGAATCAGCAGATTGCATACGAGAAAGAGACACTGGAGAATATACACAAGTCAGTGATAGATAGTGCGTATGAAGTGATCAGGCTGAAAGGGTACACGTCGTGGGCAATAGGGTACTCGGTGGCTAACTTGGCCCGTTCCATTCTGAGGGACCAAAGAAAGATCCATCCTGTGTCTGTTCTTGCCAAGGGGTTATACGGGATCGATGGGGAAGTGTTCCTGAGTTTGCCAGCACAGCTTGGTAGAGGAGGGATACTGGGTGTCACCAATATCCACTTGAACCCAGAGGAGACGCAGAGGCTTGTAGATTCAGCCAAGACCATCCTCCAAGTGCAGACTCAATTGGGTATCTAA 1047 0.5664 MHKSASGSTLGPGGLDLTQAFFKPIANADPPSTTKQHNKISVIGVGNVGMAIAQTILTQDLTDELVLVDTNADKLRGEMLDLQHAAAFLPRTKIHASTDSSITAGSDLCIVTAGARQIAGESRLNLLQRNLSLFRAIIPPLVRHSPATTLLIVSNPVDILTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLXFLENQQIAYEKETLENIHKSVIDSAYEVIRLKGYTSWAIGYSVANLARSILRDQRKIHPVSVLAKGLYGIDGEVFLSLPAQLGRGGILGVTNIHLNPEETQRLVDSAKTILQVQTQLGI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04179 349 Gene3D - 19 179 - -
Viun3g04179 349 SUPERFAMILY LDH C-terminal domain-like 178 346 IPR015955 GO:0003824|GO:0016616
Viun3g04179 349 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Viun3g04179 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 341 IPR022383 GO:0016616
Viun3g04179 349 NCBIfam L-lactate dehydrogenase 42 340 IPR011304 GO:0004459|GO:0005737
Viun3g04179 349 Hamap L-lactate dehydrogenase [ldh]. 37 348 IPR011304 GO:0004459|GO:0005737
Viun3g04179 349 CDD LDH_1 35 346 - -
Viun3g04179 349 PIRSF Lac_mal_DH 34 349 IPR001557 GO:0016616|GO:0019752
Viun3g04179 349 FunFam Malate dehydrogenase 33 179 - -
Viun3g04179 349 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Viun3g04179 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 17 347 - -
Viun3g04179 349 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Viun3g04179 349 Gene3D - 180 347 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04179 Viun-Chr3 49399438 49401639 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04179 K00016 - gmx:100814897 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04179 3 49399438 49401639 Viun3g04179 3 49399438 49401639 ECH
Viun2g02442 2 31110614 31111916 Viun3g04179 3 49399438 49401639 PCT