Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02442 ATGGCAATGCACAAGAGCAGTTCCGGTTCAGCATTGGGTCCAGGAGGCTTAGACCTAACTCAAGCCTTCTTTAAGTCCGTCATGAACGCTGCACCTTCTTCTCCCACAAAGCGCCACACCAAAATCTCCATTGTTGGTGCCGGCAACGTCGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTCCTCGTCGATGCCATTCCTGATAAACTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAGAATCCAGGCCTCCACCGACTACTCCGTCACTGCGGGCTCCGACCTCTGCATTGTCACCGCCGGTGCCCGCCAAATCCACGGCGAGTCCAGGCTGAACCTCCTACAAAGGAACGTCACCCTCTTTCACAAAATCATACCCCCTTTGGTTCGTTACTCCCCCGACACCATTCTCCTTATCGTTTCCAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAACTCTCCGGTTTCCCTTCAAACCGTGTCATCGGTTCCGGCACTAACCTGGACTCCTCACGCTTCCGTTTCCTCATCGCCGATCATCTTGATGTTAACGCTCAAGACGTCCAGGCTTTTATAGTGGGAGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGCATTAGTGTTGGGGGTGTTCCGGTGCTGAGCTTTTTGGAGAAACAGGAAATTACGTACGAGAAGGAAATGTTGGAAAACATACACAAAGAAGTTACAGAGAGTGCTTACGAGGTTATAAGTCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCTGTGGCGAACTTGGCACGAAGCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTGTCGGTTCTTGCAAAGGGTTTTTACGATATCGATGGTGAAGTGTTTCTTAGCTTGCCTGCACAACTTGGGAGAGGAGGGGTATTGGGTGTCACCAATGTGCATTTGACTGAAGAAGAGAAACACAGACTTATGAACTCAGCCACCACAATCCTCCAAGTTCAGAATCAGTTGACTATTTGA 1056 0.518 MAMHKSSSGSALGPGGLDLTQAFFKSVMNAAPSSPTKRHTKISIVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTAGSDLCIVTAGARQIHGESRLNLLQRNVTLFHKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEITYEKEMLENIHKEVTESAYEVISLKGYTSWAIGYSVANLARSILRDQRRVHPVSVLAKGFYDIDGEVFLSLPAQLGRGGVLGVTNVHLTEEEKHRLMNSATTILQVQNQLTI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02442 351 CDD LDH_1 37 348 - -
Viun2g02442 351 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 20 350 - -
Viun2g02442 351 SUPERFAMILY LDH C-terminal domain-like 180 349 IPR015955 GO:0003824|GO:0016616
Viun2g02442 351 Gene3D - 182 349 IPR015955 GO:0003824|GO:0016616
Viun2g02442 351 NCBIfam L-lactate dehydrogenase 44 342 IPR011304 GO:0004459|GO:0005737
Viun2g02442 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 179 IPR036291 -
Viun2g02442 351 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 Gene3D - 21 181 - -
Viun2g02442 351 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 344 IPR022383 GO:0016616
Viun2g02442 351 FunFam Malate dehydrogenase 35 181 - -
Viun2g02442 351 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Viun2g02442 351 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Viun2g02442 351 Pfam lactate/malate dehydrogenase, NAD binding domain 40 179 IPR001236 GO:0016491
Viun2g02442 351 Hamap L-lactate dehydrogenase [ldh]. 39 350 IPR011304 GO:0004459|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02442 Viun-Chr2 31110614 31111916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02442 K00016 - gmx:100818856 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02442 2 31110614 31111916 Viun2g02442 2 31110614 31111916 ECH
Viun2g02442 2 31110614 31111916 Viun3g04179 3 49399438 49401639 PCT