Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04169 ATGAGCAGTGGGGAACTCCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTTTGAACTGAAGAAGCAGATCTCGTGTTCTCTTCAATTGTCTAATAAGACCGATGCCTATGTCGCCTTCAAGGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGAATTGTCTTGCCGCGATCTACATGTGATGTTATGGTTACCATGCAAGCACAAAAAGAGGCTCCGCCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGCGTAAAAACTGTTGATGGTACCAGTCCGAAGGACATCACTCCGGAAATTTTCAACAAGGAGGCGGGACATGTGGTTGAGGAGAGCAAATTGAGAGTGCTGTATGTTTCTCCTCCTCAACCACCATCTCCAGTACCAGAAGGTTCCGAGGAAGGATCCTCACCTAGAGGTTCTGTTTCGGAGAATGGAAATGCCAACGGTTCTGAGTTCACACAAGTTGCGAGAGGATTTACTGAGCGACCTGAGGCTCAAGACAAATCGGCAGAGGCTAGAGCTCTTATCTCAAGACTGACTGAAGAAAAGAATAATGCACTTGAACAAAATAGCAAGCTTCGCCAGGAACTGGATCTACTGAAGCGGGAAGGCAACAAAAGTCGTGGTGGAGTATCATATGTCATTGTCGTATTAATTGGCTTACTTGGCATAATAATGGGGTATCTCTTGAAGAAGACCTAA 726 0.4532 MSSGELLNIEPLELKFPFELKKQISCSLQLSNKTDAYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVMVTMQAQKEAPPDMQCKDKFLLQSVKTVDGTSPKDITPEIFNKEAGHVVEESKLRVLYVSPPQPPSPVPEGSEEGSSPRGSVSENGNANGSEFTQVARGFTERPEAQDKSAEARALISRLTEEKNNALEQNSKLRQELDLLKREGNKSRGGVSYVIVVLIGLLGIIMGYLLKKT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04169 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Viun3g04169 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 237 IPR016763 GO:0005789
Viun3g04169 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Viun3g04169 241 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Viun3g04169 241 Coils Coil 177 211 - -
Viun3g04169 241 MobiDBLite consensus disorder prediction 126 158 - -
Viun3g04169 241 FunFam Vesicle-associated protein 1-1 1 129 - -
Viun3g04169 241 MobiDBLite consensus disorder prediction 143 158 - -
Viun3g04169 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Viun3g04169 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04169 Viun-Chr3 49363366 49366473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04169 - - gmx:100527687 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04169 3 49363366 49366473 Viun3g04169 3 49363366 49366473 ECH
Viun3g04169 3 49363366 49366473 Viun2g02434 2 31088787 31093712 PCT