Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04056 ATGGCCGTTCAAGCTCAATATCCATCCAATCTTCTCTTTCTAAACAGGAACAACGGCCAAGAACTCCTTCAGTATTCATTGCAGCAACAACAACAACAACAAGGTTCTCTTTTCACCCAACCCCATATGCTATACAACAACAACCACGACAATGGAAGTAACAACGTCGTCAACAACAACAACAATAATAATTCTCGCAAGAGGGGCAGAGAAGACTCCACTGTTGCAAACAACACAATCACCACAACACCTTCTAATCTTATTAATCCCTTCTCTTTACAATCTCAACCCCCACAGCTTATTCATCTCTCTCAGTTACATAATCATCAGCAGAATGTCGTCTCTACTGGTCTCCGCTTATCCTTCGATGACCAACAACATCAACAGAGACTACACCTTCATCACAATCAACAACCTCAACAACAACAACTATCACTGCATGCCTCTCACTCTTCTGCTTTCTCATCTCTGTTATCCCAAGCCTTCGCTTCTCAAATCAAACAACAACGTGATGAAATTGATCAATTCCTCCTCGCCCAGGGGGAACAACTGCGGCGGACATTGGCGGAGAAGAGGCAGAAGCATTACAACGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCACGGCGGCTCAGAGAGAAGGAGGCGGAAGTGGAGAAGGCCACGCGCAAGAACGCAGAGCTAGAAGCACGGGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCCGGGCCCAGGAAGCAACAGCGGCCACCCTCCAGGCCCAACTGCAGCAGACCATAATGTGTCAGGGCGGCGAGGAAGCGGCTGCCGGCGTGTCGTGCGCCGTGGAAGGCCAGGCTGAGGACGCGGAGTCTGCCCACATCGACCCAGAGCGCGTGGTGTTAGCCGCGGCGCGTCCGAAATGCAGGGGGTGCACGAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACACCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1062 0.5264 MAVQAQYPSNLLFLNRNNGQELLQYSLQQQQQQQGSLFTQPHMLYNNNHDNGSNNVVNNNNNNNSRKRGREDSTVANNTITTTPSNLINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDQQHQQRLHLHHNQQPQQQQLSLHASHSSAFSSLLSQAFASQIKQQRDEIDQFLLAQGEQLRRTLAEKRQKHYNALLSAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAATLQAQLQQTIMCQGGEEAAAGVSCAVEGQAEDAESAHIDPERVVLAAARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04056 353 Coils Coil 204 245 - -
Viun3g04056 353 MobiDBLite consensus disorder prediction 43 64 - -
Viun3g04056 353 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 47 350 IPR017066 -
Viun3g04056 353 Pfam Zinc finger, C3HC4 type (RING finger) 305 345 - -
Viun3g04056 353 ProSiteProfiles Zinc finger RING-type profile. 306 340 IPR001841 -
Viun3g04056 353 MobiDBLite consensus disorder prediction 43 89 - -
Viun3g04056 353 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 286 352 - -
Viun3g04056 353 PIRSF SBP1_RNase_bind 1 353 IPR017066 -
Viun3g04056 353 MobiDBLite consensus disorder prediction 74 89 - -
Viun3g04056 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 353 IPR013083 -
Viun3g04056 353 FunFam Baculoviral IAP repeat containing 7 315 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04056 Viun-Chr3 48233207 48235724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04056 306 342 Miscellaneous Gene Families AT2G21380 37.838 6.85e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04056 K19042 - gmx:100788924 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04056 3 48233207 48235724 Viun3g04056 3 48233207 48235724 ECH
Viun2g02328 2 30571838 30573937 Viun3g04056 3 48233207 48235724 PCT