Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02328 ATGGCTGTGCAAGCTCAATATCCCTCCAATGTACTCTTTCTAAACTGCAGCAAAACCGGAAAAGAACCATATGACTATTCTATGGCAGGGGAACTCCTTGATCATCATAATCAATCTCCTATGTTATTCAACAACGGAGGTAGTAATTCTCGAAAGAGAGGAAGAGAAACAACAGCAGCGCCAAACCTTGTCAATTCATTCTCTTTACAATCACAATCTCAATCTCAATCTCCACAGTTCATAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACAGGGCTCGGCTTATCCTTTGGTGACCAACAATTACAACAACAACAGCATGGGTGTTACTCCTCTTCTCTCCTATCTCTTTTACCCGATGCTTTCACCTTGCAAATCAAACAACACCATGATCAAATCGACCAATTCCTTCAACTCCAGGGCGAGCAATTGCGGCGGGCATTAACGGAGAAGAGGAAGAGGCATTATCGGGCGCTGCTGAGGGCAGCGGAGGAATCGGTGTTGCGGCGGCTGAGGGAGAAGGAGGTAGAGGTGGAGAAAGCGACGCGGCGCAACGCGGAGTTGGAGGCACGCGCGGCGCAGCTTGGCGTGGAGACGCAGCTTTGGCAGGCGAAGGCGAAGGCGCAGGAAGCGACTGCGGCATCGTTGCAGGCGCAGCTGCAGCAGGCCATGATGAGCGGCGAGGATGGCGGGGGAGGGGTGTCGTGCGCCGGGGGCGAGGCCGAGGATGCCGAGTCAGCATGTGTTGACCCGGAGCGAGTTGGTCCGAAATGCAGAGGGTGCGCAAAACGCGTGGCTTCAGTGGTGGTTTTGCCGTGTCGCCACCTATGCATCTGCGCTCAGTGCAACACACATTTTCGGGCGTGTCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTCAAGTCCATCTTTCTTAA 927 0.5254 MAVQAQYPSNVLFLNCSKTGKEPYDYSMAGELLDHHNQSPMLFNNGGSNSRKRGRETTAAPNLVNSFSLQSQSQSQSPQFIDLTQLHNQNVVSTGLGLSFGDQQLQQQQHGCYSSSLLSLLPDAFTLQIKQHHDQIDQFLQLQGEQLRRALTEKRKRHYRALLRAAEESVLRRLREKEVEVEKATRRNAELEARAAQLGVETQLWQAKAKAQEATAASLQAQLQQAMMSGEDGGGGVSCAGGEAEDAESACVDPERVGPKCRGCAKRVASVVVLPCRHLCICAQCNTHFRACPVCLTVKNSTVQVHLS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02328 308 PIRSF SBP1_RNase_bind 1 308 IPR017066 -
Viun2g02328 308 ProSiteProfiles Zinc finger RING-type profile. 261 295 IPR001841 -
Viun2g02328 308 Coils Coil 167 201 - -
Viun2g02328 308 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 44 305 IPR017066 -
Viun2g02328 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 308 IPR013083 -
Viun2g02328 308 Pfam Zinc finger, C3HC4 type (RING finger) 260 297 - -
Viun2g02328 308 Coils Coil 209 229 - -
Viun2g02328 308 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 244 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02328 Viun-Chr2 30571838 30573937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02328 261 297 Miscellaneous Gene Families AT2G21380 37.838 9.62e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02328 K19042 - gmx:100797727 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02328 2 30571838 30573937 Viun2g02328 2 30571838 30573937 ECH
Viun2g02328 2 30571838 30573937 Viun3g04056 3 48233207 48235724 PCT