Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03717 ATGGCACCTTCTTTCTGCGTTAATGAGAGAAAGGTATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTCTGCAATATGAAGGATGAAATCTCGTTCGGTTTGGGTCTCACAAGTCTACTATTCTGGGGAGTAGCTGAAATTCCTCAAATAATAACCGTTTTTCGTACTAAGAAAAGCCATGGAGTATCCCTCATCTTTCTCCTCACTTGGGTCGCTGGGGATATATGCAATTTGACTGGTTGCCTTCTCGAACCAGCTACTTTGCCAACACAGTATTACACAGCTCTGCTTTACACAATCACTACGATCGTATTACTTCTTCAAATCATATATTACGACTACATAAGCAATTGGTACAAACATCCTCAGAAGGTCAACCACAAAAGGGAAGAAGAAGATGAGAGAAAGCCATTGAAGCCACCGAAACCAGCCCACGAGTCTGGAATTCCAATACCAAATGGCACACGCCAAGCAGTACCTAGACAGGAGCACTATTATATGTCAGCAAGATCATTGGCTGGAAGTGGCACTCCACCCTGGGGAACTTACATGAGAGCTGCTAAAAGTGGTCCTTCAGCCATGGAATCCATAGATGCCTCTTCTTCCGAGGATGATGAAGCTTATCCACCTTCCTCAAAAAATCCTCCGATCAAGCCTAGGCCAATCCCACGTCCTGCACCTGGAAGTTATGGTACATTTCTAGCAGCTGCTGTTAGTTTGCCTCTCAAGGCTAATGGTTTGAGGGAAAGGTACATGAGGTTTGCTGGAAGAAAACTTTTGCAGGAATACGAGACACATAGTACACTTGGTCAATGGTTGGGATGGCTCATGGCAGCTATCTATATAAGTGGTCGGCTTCCTCAAATATGGCTGAACATTAAAAGAGGGAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTTGCATTGGTAGCTAATGTCACTTACGTGGGCAGTATTCTTGTGAGAACTACAGAATTGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCAGTATTGTGCGTGGTTTTGGACCTTTTCATAATATTGCAGTACATCTACTATAGATACTTTCGAAGGAGAGAAGGAAAAGGAGAGAACTACGAAGAGGAAAGGCTGCATCAGCTTGAGTTTTGTGGCTAG 1155 0.4355 MAPSFCVNERKVCVRWVEKYFKDCLCNMKDEISFGLGLTSLLFWGVAEIPQIITVFRTKKSHGVSLIFLLTWVAGDICNLTGCLLEPATLPTQYYTALLYTITTIVLLLQIIYYDYISNWYKHPQKVNHKREEEDERKPLKPPKPAHESGIPIPNGTRQAVPRQEHYYMSARSLAGSGTPPWGTYMRAAKSGPSAMESIDASSSEDDEAYPPSSKNPPIKPRPIPRPAPGSYGTFLAAAVSLPLKANGLRERYMRFAGRKLLQEYETHSTLGQWLGWLMAAIYISGRLPQIWLNIKRGSVEGLNPFMFVFALVANVTYVGSILVRTTELESIKANMPWLLDAVLCVVLDLFIILQYIYYRYFRRREGKGENYEEERLHQLEFCG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03717 384 FunFam Vacuolar membrane PQ loop repeat protein 271 369 - -
Viun3g03717 384 Pfam PQ loop repeat 32 88 IPR006603 -
Viun3g03717 384 Pfam PQ loop repeat 271 325 IPR006603 -
Viun3g03717 384 FunFam PQ loop repeat family protein 33 124 - -
Viun3g03717 384 SMART ctns 285 316 IPR006603 -
Viun3g03717 384 SMART ctns 46 77 IPR006603 -
Viun3g03717 384 MobiDBLite consensus disorder prediction 194 226 - -
Viun3g03717 384 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 363 - -
Viun3g03717 384 MobiDBLite consensus disorder prediction 129 158 - -
Viun3g03717 384 Gene3D - 35 124 - -
Viun3g03717 384 Gene3D - 271 372 - -
Viun3g03717 384 MobiDBLite consensus disorder prediction 129 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03717 Viun-Chr3 44149673 44153891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03717 K23678 - gmx:100789634 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03717 3 44149673 44153891 Viun3g03717 3 44149673 44153891 ECH
Viun2g02016 2 28579662 28583073 Viun3g03717 3 44149673 44153891 PCT