Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03690 ATGTGGCGATGCGTGGCTCGTGCGAATCACCAATCACTGAGATCTCACGTGTCAAGATTTTTCTCTAGTAGTGGAAACTCCTCCTACAACGTGGTCGATCACAAGTACGATGCGGTTGTCGTGGGTGCTGGGGGTGCAGGGTTGAGAGCCGCCATTGGACTTTCCGAACATGGCTTCAACACTGCTTGCATCACAAAGCTCTTCCCAACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCCGTCATTGAACTTGAAAATTATGGACTGCCATTTTCAAGAACTGAAGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCGTGTGCTGCTGATCGAACTGGACATGCTTTGTTGCACACTCTCTACGGCCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCACTAGATCTATTAATGAACAGTGATGGTAGTTGCCAAGGAGTGATTGCGTTGAATATGGAGGATGGAACATTACATCGTTTCCAAGCAGCTTCAACAATTTTGGCCACGGGGGGCTATGGTAGAGCATATTTTTCTGCCACCTCAGCACATACATGTACTGGAGATGGCAATGCCATGGCTGCACGGGCTGGGGTCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCTACGGGCATATATGGAGCGGGTTGCCTTATCACGGAAGGTTCTCGTGGTGAAGGTGGGATTCTCAGGAACAGTGAGGGTGAGAGGTTTATGGAACGTTATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTTGTTTCCAGATCAATGACTATGGAAATTCGGGAAGGCCGTGGTGTAGGACCCCATAAAGATCACATCTATCTACACCTGAATCACTTACCCCCAGATGTTCTCAAGGAGAGACTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAGCCTATTCCTGTTTTGCCAACAGTGCATTATAACATGGGTGGTATTCCCACGAATCATCATGGAGAGGTGGTTACTATTAAAGGTAATGATCCAGATGCAGTAGTTCCTGGATTAATGGCTGCTGGGGAAACAGCCTGTGCTTCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCGTAGGCCAGGAGATAAACAAAAGCCTTTAGAGAAAGATGCTGGTATGAAAACAATTGCTTGGCTGGACAAATTGAGAAATTCAAATGGATCATTGCCAACTTCCAAAATTCGGTTGAATATGCAAAGAGTAATGCAAAGCAATGCTGCTGTGTTCCGTACCCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCATGATGTCAAGTTGAAGGATCGAGGTTTGATATGGAACTCTGACCTGATTGAGACCATTGAGTTGGAAAATCTTTTGATTAATGCCTGCATCACCATGCATTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACGAAAAGAGACGATGAAAGCTGGATGAAACACACTTTGGGATATTGGGAGAATGAGAAGGTCCGGTTAGATTACAGGCCAGTGCACATGAACACTTTGGACGATGAAGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAA 1863 0.4498 MWRCVARANHQSLRSHVSRFFSSSGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGVPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIRRPGDKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFHDVKLKDRGLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDESWMKHTLGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03690 620 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 459 575 - -
Viun3g03690 620 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 379 444 - -
Viun3g03690 620 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 25 253 - -
Viun3g03690 620 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 275 378 - -
Viun3g03690 620 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 572 620 - -
Viun3g03690 620 Gene3D - 37 444 IPR036188 -
Viun3g03690 620 Gene3D - 460 570 - -
Viun3g03690 620 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 479 620 IPR037099 GO:0016491
Viun3g03690 620 Pfam FAD binding domain 37 433 IPR003953 -
Viun3g03690 620 SUPERFAMILY FAD/NAD(P)-binding domain 30 456 IPR036188 -
Viun3g03690 620 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 378 IPR027477 -
Viun3g03690 620 PIRSF SDHA_APRA_LASPO 26 610 - -
Viun3g03690 620 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 17 620 IPR030664 -
Viun3g03690 620 Gene3D succinate dehydrogenase protein domain 571 620 - -
Viun3g03690 620 Pfam Fumarate reductase flavoprotein C-term 489 620 IPR015939 GO:0016491
Viun3g03690 620 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 71 80 IPR003952 GO:0016491
Viun3g03690 620 NCBIfam succinate dehydrogenase flavoprotein subunit 34 620 IPR011281 GO:0006099|GO:0016627|GO:0050660
Viun3g03690 620 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 37 620 IPR014006 GO:0016627|GO:0022900|GO:0050660
Viun3g03690 620 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 265 383 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03690 Viun-Chr3 43783064 43790648 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03690 K00234 - gmx:100802169 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03690 3 43783064 43790648 Viun3g03690 3 43783064 43790648 ECH
Viun2g01973 2 28275733 28282077 Viun3g03690 3 43783064 43790648 PCT