Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01973 ATGTGGCGGTGCATCGCTCGGGGGCTTCGTGGAGCTGCTTCCACCACCAGATCCACCTCTAATCACCCTCTCGGATCTCACCTTTCTAGACTCTTCTCCAGTGGGGTTAACTCCTCGTACACCGTGGTGGATCATACTTATGATGCTGTTGTGGTAGGTGCTGGTGGCGCGGGATTGAGAGCTGCTATTGGACTTTCAGAACATGGGTTCAAGACTGCTTGTATCACCAAGCTCTTCCCCACTCGTTCTCATACGGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAACATGACAGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGTGATCAGGATGCCATACAGTATATGTGCAGGGAAGCGCCAAAAGCAGTCATCGAGCTAGAGAACTATGGTTTACCATTTTCCCGAACTGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTACGGAAAAGGAGGTCAAGCATACCGCTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGTCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTTTTAATGAATAATGATGGCACTTGCCAGGGAGTAATTGCCTTGAATATGGAGGATGGGACACTACATCGTTTCCAAGCAGCCTCCACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACACACATGTACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCTCTTGAGGATTTGGAGTTTGTACAATTTCACCCTACTGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGCTCTCGTGGTGAAGGTGGAATTCTCAGGAACAGTGAGGGTGAGCGGTTTATGGAAAGATATGCCCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACAATGGAGATTAGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATCTCTGAAACTGCTGCTATTTTTGCTGGTGTAGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACTGTACATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATGCAGTGATTCCTGGATTGATGGCTGCCGGGGAAACAGCCTGTGCATCAGTCCATGGTGCCAATAGGCTCGGTGCAAATTCACTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAGACCAGGAGAGAAACAAAAGCCTTTGGAGAAAGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAGCGAGTGATGCAAAGCAATGCTGCTGTGTTCCGTACACAGGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACTTGGGAGAGTTTCCGTGATGTTAAGGTCGAGGACCGCAGTTTGATATGGAACTCCGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCTTGCATCACAATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAACTGGATGAAACACACTGTGGGATACTGGGAGAACGAGAAGGTCCGGTTGGACTACAGGCCAGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGTGTCTATTGA 1896 0.4573 MWRCIARGLRGAASTTRSTSNHPLGSHLSRLFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNNDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDAVIPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFRDVKVEDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDENWMKHTVGYWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01973 631 PIRSF SDHA_APRA_LASPO 37 620 - -
Viun2g01973 631 Gene3D succinate dehydrogenase protein domain 583 631 - -
Viun2g01973 631 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 583 631 - -
Viun2g01973 631 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 390 455 - -
Viun2g01973 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 490 631 IPR037099 GO:0016491
Viun2g01973 631 Gene3D - 48 455 IPR036188 -
Viun2g01973 631 SUPERFAMILY FAD/NAD(P)-binding domain 39 467 IPR036188 -
Viun2g01973 631 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 286 389 IPR027477 -
Viun2g01973 631 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 286 389 - -
Viun2g01973 631 Pfam Fumarate reductase flavoprotein C-term 500 631 IPR015939 GO:0016491
Viun2g01973 631 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 276 394 IPR027477 -
Viun2g01973 631 Gene3D - 471 582 - -
Viun2g01973 631 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 470 586 - -
Viun2g01973 631 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 48 631 IPR014006 GO:0016627|GO:0022900|GO:0050660
Viun2g01973 631 Pfam FAD binding domain 48 444 IPR003953 -
Viun2g01973 631 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 36 262 - -
Viun2g01973 631 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 31 631 IPR030664 -
Viun2g01973 631 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Viun2g01973 631 NCBIfam succinate dehydrogenase flavoprotein subunit 45 631 IPR011281 GO:0006099|GO:0016627|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01973 Viun-Chr2 28275733 28282077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01973 K00234 - gmx:100818379 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01973 2 28275733 28282077 Viun2g01973 2 28275733 28282077 ECH
Viun2g01973 2 28275733 28282077 Viun3g03690 3 43783064 43790648 PCT