Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03643 ATGTCTGGACCCCTTTCTCCAAAGACATCTCTTGAAAAGTGTGATCGTGTTGGCTCATTGAAGAAGAAGTTGAGGAATTCCTTGACAAAGAGTAGGAGAAGAAGCAGCAGCAAGGTTATGTCGATTGAAATCGAGGATATCCGCGATGCTGGAGAATCCAAAGCCGTTGACGAGTTCCGTCAGGCTCTTCTCTTGGACGAACTCCTACCAGACAAGCACGATGATTATCACATGATGCTCAGGTTCCTTAAGGCAAGGAAATTTGACCTTGAGAAATCTAAGCAAATGTGGTCTGATATGCTTCAATGGAGGAAGGAATTTGGCGCTGACACCATCACCGAGGACTTTGAATTCAAGGAACTCGCTGAAGTCTTGCAATATTATCCTCAAGGACATCACGGAGTCGATAAAGATGGGCGACCAGTATACATTGAGAGATTGGGCCAAGTCGATGCCACCAAGTTGATGCAAGTCACAACCATGGAGCGCTATATCAAATACCATGTCAAAGAGTTCGAGAGAACATTTGATGTGAAATTCGCAGCTTGCTCCATTGCAGCAAAGAAACACATCGATCAAAGCACAACCATCCTTGATGTGCAAGGAGTGGGCCTTAAGAACTTTAACAAGCATGCCAGGGATCTTATCACATGCCTTCAGAAGATCGACGGAGACAACTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGGGCACTGTTAAATCCTTCCTTGACCCAAAGACCACATCAAAGATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGCAAATGCACTTGTGCCGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGAAGAAATAATGAGGATGGTTCAAAATGGCGAGCACAAATGTTCAAGGAAATGCGAGGCTCCAGTCATGGAAGACAAGACAACTTCTGAGGAACACGAGACTGCCAAGTCGGAAGCAAAACTCACTCCACAATTGTCTTCTGCCTTTTCTGAGGTTGCTACTTCCAAGAGCTTCAAATACGAGGACTATGTCCCCAAAGCTGAAAAATCTGCTTGGAAAAAGGTAGCAGACAACGACCGATATGCAGTATCCAAAGGTGGAGCAGATTTATACGCCATGGATTCTTTCAAGATTCACGAGAGAGTGAACTCACAGATTTTCACCGGCGTGATGGCCTTCGTGATGGGCATATTGACAATGGTGAGGATGACGAGGAACATGCCGAAGAAGCTGACAGACGCGAACTTCTACTCGAACTTTGGTGAATACAAGGGACAGGCCAGCAACGACCAAATGACCGTCCCTGCCATCTCTGCTCAAGAGTTCATGACTGTGATGAAGCGCATGGCTGAGTTGGAAGAGAAAATGAGCAACATGAACAACCTCGCCATCTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCTATCACTCGCGCAGATGCATTGGAGCAAGAACTCATGGCAACCAAAAAGGCTTTGGAGGAGTCCCTTACTAAGCAAGATCAGCTTTCGGCTTACGTTGAGAAGAAGAAGAAGAAGAAGAAGTTGTTGTACATTTGGTAA 1653 0.4574 MSGPLSPKTSLEKCDRVGSLKKKLRNSLTKSRRRSSSKVMSIEIEDIRDAGESKAVDEFRQALLLDELLPDKHDDYHMMLRFLKARKFDLEKSKQMWSDMLQWRKEFGADTITEDFEFKELAEVLQYYPQGHHGVDKDGRPVYIERLGQVDATKLMQVTTMERYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARDLITCLQKIDGDNYPETLNRMFIINAGSGFRMLWGTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDESELPEFLGGKCTCADQGGCMRSDKGPWKDEEIMRMVQNGEHKCSRKCEAPVMEDKTTSEEHETAKSEAKLTPQLSSAFSEVATSKSFKYEDYVPKAEKSAWKKVADNDRYAVSKGGADLYAMDSFKIHERVNSQIFTGVMAFVMGILTMVRMTRNMPKKLTDANFYSNFGEYKGQASNDQMTVPAISAQEFMTVMKRMAELEEKMSNMNNLAICMPPEKEEMLNAAITRADALEQELMATKKALEESLTKQDQLSAYVEKKKKKKKLLYIW 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03643 550 Pfam CRAL/TRIO, N-terminal domain 24 99 IPR011074 -
Viun3g03643 550 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Viun3g03643 550 Gene3D - 108 320 IPR036865 -
Viun3g03643 550 Coils Coil 502 529 - -
Viun3g03643 550 Coils Coil 470 490 - -
Viun3g03643 550 SUPERFAMILY CRAL/TRIO domain 120 316 IPR036865 -
Viun3g03643 550 FunFam SEC14 cytosolic factor 108 320 - -
Viun3g03643 550 SUPERFAMILY CRAL/TRIO N-terminal domain 51 116 IPR036273 -
Viun3g03643 550 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Viun3g03643 550 SMART sec14_4 120 291 IPR001251 -
Viun3g03643 550 Gene3D - 25 107 - -
Viun3g03643 550 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 12 541 - -
Viun3g03643 550 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Viun3g03643 550 CDD SEC14 119 289 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03643 Viun-Chr3 43299379 43303670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03643 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 27.642 1.62e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03643 K26544 - gmx:100785716 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03643 3 43299379 43303670 Viun3g03643 3 43299379 43303670 ECH
Viun11g02467 11 38197875 38201774 Viun3g03643 3 43299379 43303670 ECH