Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02467 ATGTGTGACATTGTAGCTGTGCCCTCCATACCTATCACAGATCGACCTGCTAAAGGTGCTGAGATGGAATACTCAGAGGATGATAAGAAAAAAAAGCTTGGCTCTTTTAAGAAGGTTGCAATCAGTGCATCTTCAAAGTTCAAGCATTCCTTGCATAAGAAGGGGAGAAGGCATAGCAGGGTTATGTCTATTGCTATTGAGGATGAAGTTGATGCAGAAGAGTTGCAATCAGTTGATGCTTTTCGCCAAACACTCATCTTAGAAGAGCTATTACCCTCAAAACATGATGATCATCATACGATGTTAAGATTCTTGAGAGCAAGAAAATATGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTCGGTGCTGACACAATTATGGAGGATTTTGAATTCAAGGAGTTAGAACAAGTTCTAAAATACTACCCGCAAGGGCATCATGGAGTTGATAAGCTAGGGCAACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGTTGCAAGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAGTTTGAGAGGACATTCGCTGTTAAGTTCCCTGCTTGTTCCATTGCAGCCAAGAAACACATTGACCAAAGCACAACGATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAACGTCTTCAGAAGATTGATGGTGACAACTACCCTGAGACCTTAAACCGTATGTTCATCATTAATGCTGGTTCAGGATTTAGGCTGTTGTGGAACACTGTCAAGTCATTCCTTGATCCTAAGACCACCGCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACCTGTGGAGACAAAGGTGGTTGCTTGCTTTCAGACAAGGGACCATGGAATGACACAGAAATCTTGAAGATGGTTCAAAATGGAGGAGGAAAATGCAAGAGGAAAAGTTTATCCAGGATCGAAGTGAAAACCATCATTGAAGATGATGCAGCATGCCAAAAGGAACGCGATTCTTTAAAGAAAGAATCTGCAGCTATGGAGGATCCGGGTGCGGCTCCAGAGGTGACATTTGCACCAGGGAATAAATCTTGGAAAAAAGCAGAACAAAAAGATCAGTTAGCCCTTTCTAAAGATTGTTTATCTAGCAACAACAATTCTAATCGGTTTAGAATCCCATTTAGTGGTGGAATCATGTCCATTCTTATGGCAGTGATAACAGTTATCCGCGTGGCAAAGAAAGTGCCAAGAAAAATCACTGGAGCTGACATGTTTGGTAACACAGCATATTGTAATAGCAACGAGATGAAAGCACCTGCAATTTGCATGGATGATCAAATGGCCATGATGAAGCGCATGGCTGAGCTAGAAGAGAAGGTGAATATCCTCTCTAAGAAACCTGAGATGCCACCTGAGATGGAAGCATTGCTGAATAAGGCTCTTAGCAGAATCGGTACGCTGGAACAAGACTTGGCTATTACCAAAAAGTCACTTGACGATGCCCTTATCCGACAAGTGGAGCTTCAAGGTCACAATGATAAAAAGAAAAAGAAGAGGATGTTCCGCTGGTAA 1665 0.4228 MCDIVAVPSIPITDRPAKGAEMEYSEDDKKKKLGSFKKVAISASSKFKHSLHKKGRRHSRVMSIAIEDEVDAEELQSVDAFRQTLILEELLPSKHDDHHTMLRFLRARKYDIEKTKQMWADMLQWRREFGADTIMEDFEFKELEQVLKYYPQGHHGVDKLGQPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFAVKFPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCGDKGGCLLSDKGPWNDTEILKMVQNGGGKCKRKSLSRIEVKTIIEDDAACQKERDSLKKESAAMEDPGAAPEVTFAPGNKSWKKAEQKDQLALSKDCLSSNNNSNRFRIPFSGGIMSILMAVITVIRVAKKVPRKITGADMFGNTAYCNSNEMKAPAICMDDQMAMMKRMAELEEKVNILSKKPEMPPEMEALLNKALSRIGTLEQDLAITKKSLDDALIRQVELQGHNDKKKKKRMFRW 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02467 554 Gene3D - 130 341 IPR036865 -
Viun11g02467 554 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 142 316 IPR001251 -
Viun11g02467 554 Pfam CRAL/TRIO domain 148 310 IPR001251 -
Viun11g02467 554 FunFam SEC14 cytosolic factor 130 342 - -
Viun11g02467 554 SUPERFAMILY CRAL/TRIO N-terminal domain 68 138 IPR036273 -
Viun11g02467 554 SUPERFAMILY CRAL/TRIO domain 142 338 IPR036865 -
Viun11g02467 554 SMART sec14_4 142 313 IPR001251 -
Viun11g02467 554 Coils Coil 477 497 - -
Viun11g02467 554 Gene3D - 40 129 - -
Viun11g02467 554 PRINTS Cellular retinaldehyde-binding protein signature 100 122 - -
Viun11g02467 554 PRINTS Cellular retinaldehyde-binding protein signature 269 288 - -
Viun11g02467 554 PRINTS Cellular retinaldehyde-binding protein signature 302 311 - -
Viun11g02467 554 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 21 546 - -
Viun11g02467 554 CDD SEC14 143 311 IPR001251 -
Viun11g02467 554 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Viun11g02467 554 Pfam CRAL/TRIO, N-terminal domain 94 121 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02467 Viun-Chr11 38197875 38201774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02467 76 307 Acyl Lipid Metabolism Gene Families AT5G47730 26.829 6.14e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02467 K26544 - gmx:100792335 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02467 11 38197875 38201774 Viun11g02467 11 38197875 38201774 ECH
Viun11g02467 11 38197875 38201774 Viun3g03643 3 43299379 43303670 ECH