Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03556 ATGACTTCTTCAACTGTCACTCTCATCTTCCTATTTTTCTCTCACTTTCTTAAAGGGATTTTGTCCGGCGCCGGAACGGCGCAACTCGCTACCACCGGCTTTGCCCTGCAACCCGCTCAGTCCGACGCCTTCGTCGTCCCCACCAATTGGTCCGGCCGCCTCTGGGGCCGAACCCTGTGCTCCACGGACTCCGCTGGAAAATTCTCCTGCGTCACCGGAGACTGCGGCTCCTCCGCCATGGAATGCAACGGTGGAGGGGCAGCTCCGCCTGCCACACTAGCTGAGTTCACCTTGAACGGCGGCGGTGGACTGGATTTCTACGACGTCAGCGTGGTGGACGGCTACAACCTCCCCATGCTGGTTGAGGCACAAGGCGGCGGGGGAAACTGCACCGCGACCGGATGCGCGGCGGACTTGAACGGAGGGTGTCCGGCGGAGCTGAAGGTGAGGGCAGCAGCGAGTGGGGAAGGCGTTGCGTGCAAGAGCGCGTGCGAAGCCTTTGGGGATCCGCGGTATTGTTGTAGTGGGCCCTACTCGACGCCTGAGACATGCAAGGCGAGCTCTTACTCGCAGTTGTTCAAGAGCGCGTGCCCACGCGCCTATAGCTTCGCATACGACGATGCCACCAGCACCTTCACTTGCGCCTCTGCGGATTACCGCATCACTTTCTGTCCCTCCTCCACCAAAAGGTCGATAAAATCAGGAAATGGGAAATTCCCAGTTGCAGTAGATGTGTCAGTTGGGCATGGTTATGCTGAGAAGTCACCGAAGCTGATGATATTAGGTCTTGCCACTGTTTTATTAACAATATGGTGGCAACTATAA 825 0.5758 MTSSTVTLIFLFFSHFLKGILSGAGTAQLATTGFALQPAQSDAFVVPTNWSGRLWGRTLCSTDSAGKFSCVTGDCGSSAMECNGGGAAPPATLAEFTLNGGGGLDFYDVSVVDGYNLPMLVEAQGGGGNCTATGCAADLNGGCPAELKVRAAASGEGVACKSACEAFGDPRYCCSGPYSTPETCKASSYSQLFKSACPRAYSFAYDDATSTFTCASADYRITFCPSSTKRSIKSGNGKFPVAVDVSVGHGYAEKSPKLMILGLATVLLTIWWQL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03556 274 FunFam THAUMATIN-LIKE PROTEIN 1 5 225 - -
Viun3g03556 274 SUPERFAMILY Osmotin, thaumatin-like protein 20 226 IPR037176 -
Viun3g03556 274 SMART tha2 19 225 IPR001938 -
Viun3g03556 274 CDD TLP-PA 19 224 - -
Viun3g03556 274 ProSiteProfiles Thaumatin family profile. 19 225 IPR001938 -
Viun3g03556 274 PRINTS Pathogenesis-related protein signature 105 121 IPR001938 -
Viun3g03556 274 PRINTS Pathogenesis-related protein signature 53 64 IPR001938 -
Viun3g03556 274 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Viun3g03556 274 PRINTS Pathogenesis-related protein signature 32 41 IPR001938 -
Viun3g03556 274 PANTHER OS03G0233200 PROTEIN 18 225 IPR001938 -
Viun3g03556 274 Pfam Thaumatin family 18 225 IPR001938 -
Viun3g03556 274 Gene3D Thaumatin 5 225 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03556 Viun-Chr3 42392564 42395998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03556 5 237 Receptor kinase-like Gene Family AT5G38280 46.538 2.31e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03556 - - gmx:100809419 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03556 3 42392564 42395998 Viun3g03556 3 42392564 42395998 ECH
Viun11g02572 11 38877651 38880041 Viun3g03556 3 42392564 42395998 ECH