Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02572 ATGGGTCGCTGGCTTCTCTTTCTCATCATTCTCAGCCTTGTCGCATTATCTTTCCTCTCAGAGGTACAATCGGCATCGTTCCAGATTGTGAACAAGTGTCGCCACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCGCCGCCGCTTCCCACCACCGGATTTACTCTCCAGAGTGGAGACTCGAAGACGTTGAAATTCCCGAAATCCTGGTCGGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACGCGGACGGAAAGTTCTCCTGCGGCACCGCCGACTGCGGCTCCGGCAAAGTAGAGTGCGTCGGCGGGGCCAAGCCGCCGGCGACATTGGCAGAGTTCACTCTGAACGGCGCCGACGGGTTGGACTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGACGGCACCAGGGGCGGGTGCAGCGCCACGGGGTGTCTCGTCGACCTCAACGGCGGGTGTCCGGCGGAGCTGAGGGTGGCGCGCGTGAACGGCAGCCGCAGGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGTGATCCTCGGTTTTGCTGCAGCGACGCGTACTCGACGCCTGACACGTGTGGTCCTTCTCCCTATTCGCTGTTCTTCAAGCACGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACGAGCACCTACACATGTGCCTCCGCTAACTATTTGATCATTTTCTGCCCTTTGCCCTACACCAGCCAAAAAGTTTTGGGAGCACGTAAAGATGGGGCACAACTTCCTCTGGTAAACAAAACTATGATGTACTTGTCAAGGCTTCAGTCAAGTGGTTCTTCTCCATTCGTTGTGGTTCATATGCAGAGCATAGCTTATGTTGCCTCTGTTTTAGTGACTCTGTTCCTGTTCTGCCCTCTCTAA 933 0.5723 MGRWLLFLIILSLVALSFLSEVQSASFQIVNKCRHTIWPGLLSGATSPPLPTTGFTLQSGDSKTLKFPKSWSGRIWARTLCGQDADGKFSCGTADCGSGKVECVGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSATGCLVDLNGGCPAELRVARVNGSRRSVACRSACEAFGDPRFCCSDAYSTPDTCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAQLPLVNKTMMYLSRLQSSGSSPFVVVHMQSIAYVASVLVTLFLFCPL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02572 310 SMART tha2 27 247 IPR001938 -
Viun11g02572 310 CDD TLP-PA 26 246 - -
Viun11g02572 310 PIRSF PR5 1 301 IPR001938 -
Viun11g02572 310 Pfam Thaumatin family 31 247 IPR001938 -
Viun11g02572 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Viun11g02572 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Viun11g02572 310 Gene3D Thaumatin 25 247 IPR037176 -
Viun11g02572 310 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Viun11g02572 310 PANTHER OS03G0233200 PROTEIN 12 247 IPR001938 -
Viun11g02572 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Viun11g02572 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Viun11g02572 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Viun11g02572 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Viun11g02572 310 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Viun11g02572 310 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02572 Viun-Chr11 38877651 38880041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02572 5 247 Receptor kinase-like Gene Family AT5G38280 50.407 6.74e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02572 - - gmx:100802252 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02572 11 38877651 38880041 Viun11g02572 11 38877651 38880041 ECH
Viun11g02572 11 38877651 38880041 Viun3g03556 3 42392564 42395998 ECH