LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g03250	ATGGCCGGACAGACATACGAGGAAGCCGTTGCAGCGTTGACCAAGCTTATAAGCGAGAAAGCTGACCTGGGTGCCGTCGCCGTCGCAAAAATCAATCAGTTGACGACAGAGCTGAAGAACGATGCGTCGAAGCCGTTCAACCCGGACGAGAGGATCCGAACCGGGTTCGACCACTTCAAGAACGAGAAATTCCAGAAGAATCCAGAATTGTATGGTGAACTTGCCAAAGGCCAGAGTCCTAAGTTTCTGGTGTTTGCTTGCTCAGACTCGAGAGTTTGCCCTTCCCATATTCTGGATTTCCAACCGGGTGAAGCGTTTGTGGTCCGAAATATAGCCAACATGGTTCCTCCTTATGACAAGACCAAGTATTCAGGAACAGGAGCGGCCATTGAATATGCAGTGCTGCATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGTTGCTGTGGAGGTATAAAGGGCCTAATGTCCATCCCAGATGATGGGACCACTGCAAGTGAATTCATAGAGAATTGGGTCCAAATTTGCACTCCGGCAAAGTCCAAGGTTAAGACTGAAGCAGGCACATTGGAATTTTCGGAGCTGTGTACCAACTGCGAGAAGGAAGCTGTGAATGTATCAGTTGGGAACCTTTTGACTTATCCATTTGTGAGAGAAGGTGTTGTGAATAAAACGCTTGCTTTGAAAGGTGCACATTACAATTTCGTTAAGGGTAGCTTTGAGCTGTGGGATCTGGACTTCAAAATCTCTAACTCTCTCACTGTTTAA	771	0.4682	MAGQTYEEAVAALTKLISEKADLGAVAVAKINQLTTELKNDASKPFNPDERIRTGFDHFKNEKFQKNPELYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIENWVQICTPAKSKVKTEAGTLEFSELCTNCEKEAVNVSVGNLLTYPFVREGVVNKTLALKGAHYNFVKGSFELWDLDFKISNSLTV	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g03250	256	CDD	beta_CA_cladeB	55	244	IPR045066	GO:0004089\|GO:0008270
	Viun3g03250	256	Gene3D	Carbonic anhydrase	39	256	IPR036874	GO:0004089\|GO:0008270
	Viun3g03250	256	Pfam	Carbonic anhydrase	83	240	IPR001765	GO:0004089\|GO:0008270
	Viun3g03250	256	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	87	94	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Viun3g03250	256	SMART	Pro_CA_2	75	245	IPR001765	GO:0004089\|GO:0008270
	Viun3g03250	256	FunFam	Carbonic anhydrase	37	256	-	-
	Viun3g03250	256	PANTHER	CARBONIC ANHYDRASE	34	248	IPR001765	GO:0004089\|GO:0008270
	Viun3g03250	256	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 2.	131	151	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Viun3g03250	256	SUPERFAMILY	beta-carbonic anhydrase, cab	40	250	IPR036874	GO:0004089\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g03250	Viun-Chr3	39343378	39348220	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g03250	K01673		-	gmx:100808326	458.373

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun2g01227	2	22955384	22964401	Viun3g03250	3	39343378	39348220	PCT