Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02267 ATGCCTGGTTTTGTGGCTGAAAAGAAGAGATATACAGACCCAAAAATGTGTTTTCCCAATTTGGCCAACCATGATAAACCAACCCCTACAAAAAGCAATCTTTGTGTGAGGTCTGAGGCTGTAGATGATGATGAAGATGGTAGTAGCCCCATTCTACCAGGGCTGCCTGATGATGTTTCAAAGCACTGCCTTGCACTTGTGCCTCGTTCTAACTTCCCAGCCATGGGTGGTGTAAGTAAGAGATGGAGAGGCTTTATTCAAAGCAAAGAATTTATAACTGTGCGAAAATTGGCGGGCATGGACGAGGAATGGCTCTATATCTTAACAGCCGGTAGCAAAGGAAAAGGGAGCCATTGGGAGGTCATGGATTGTCTGGGTCACAATCGCCGATCTCTTCCACCAATGCCTGGGCCAGCAAAGGCTGGCTTTGGGGTGGTGGTTCTCAATGGAAAGCTCCTTGTTATGGCTGGTTGTTCATCAATTGATGGAACTGCATCTGTCTCAGAAGAGGTTTATCAATATGATTCTTGCCTTAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGGTATGACTTTGCTTGTGCTGAAGTGAATGGCTTGGTTTATGCTGTTGGAGGCTACGGCGCAAACGGCGACGGCCTCTCCAGTGCAGAGGTGTATGATCCGGATACCAACAAGTGGACGCCAATAGAGAGCCTTCGCCGCCCAAGATGGGGTTGCTTTGCCTGTGGATTTGAAGGGAAACTCTATGTCATGGGTGGAAGGTCAAGCTTTACTATTGGAAATTCCAAGTTTGTTGATGTTTACAGCCCTGAGAAGCACGGCTGGTGTGAGATGAAAAATGGGTGTGTGATGGTCACTGCTCATGCAGTGCTGGGAAAGAAGTTGTTCTGTATGGAGTGGAAAAACCAGCGTAAGTTGGCAATATTCAATCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCTTTGACAGGGAGTTCAAGCATTGGTTTTCGGTTTGGGATATTGGACGATAAGTTGTTGCTGTTCTCACTGGAGGAAGAGCCTTCATATTGGACTTTGTTGTATGATCCAAGTGCAGCACCAGGATCTGAGTGGCAAACTTCTGATATAAGACCATCTGGTTTGTGCTTAAGCAGTGTAACTATTAGAGCCTGA 1167 0.4644 MPGFVAEKKRYTDPKMCFPNLANHDKPTPTKSNLCVRSEAVDDDEDGSSPILPGLPDDVSKHCLALVPRSNFPAMGGVSKRWRGFIQSKEFITVRKLAGMDEEWLYILTAGSKGKGSHWEVMDCLGHNRRSLPPMPGPAKAGFGVVVLNGKLLVMAGCSSIDGTASVSEEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGANGDGLSSAEVYDPDTNKWTPIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYSPEKHGWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDDKLLLFSLEEEPSYWTLLYDPSAAPGSEWQTSDIRPSGLCLSSVTIRA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02267 388 Pfam F-box domain 54 90 IPR001810 GO:0005515
Viun3g02267 388 SUPERFAMILY Kelch motif 102 348 IPR015915 GO:0005515
Viun3g02267 388 CDD F-box_AtAFR-like 51 95 - -
Viun3g02267 388 Gene3D - 86 378 IPR015915 GO:0005515
Viun3g02267 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Viun3g02267 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Viun3g02267 388 Pfam Kelch motif 239 283 IPR011498 GO:0005515
Viun3g02267 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Viun3g02267 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Viun3g02267 388 PANTHER OS02G0202900 PROTEIN 8 384 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02267 Viun-Chr3 19844966 19848455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02267 55 233 Miscellaneous Gene Families AT4G33900 28.497 6.08e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02267 - - gmx:100815474 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02267 3 19844966 19848455 Viun3g02267 3 19844966 19848455 ECH
Viun1g03449 1 41443613 41446398 Viun3g02267 3 19844966 19848455 PCT