Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03449 ATGCCTGATCTTGCTGTTGGAAAGAAGAGATTTATCCAGCCAAATATGTGTTTCACCAATTTGACCAATCAAGATAAATCAACTCTTTCACAAAGTGATAATTGTTTCTTCTCCGAAGCACTGAGTGAAGATTATAGCCCAATTCTACCTGGGCTGCCTGATGATGTGGCCGAGTATTGTCTGGCACTTGTGCCTCGTTCCAATTTCCCTGCTATGGGGGGTGTCTGTAAGAGATGGAGATCGTTTATTCAAAGCAAAGCATTCACCACAGTGCGAAAATTGGCTGGGATGCTTGAGGAATGGCTCTATTTCTTAACAACAGACTGTGAAGAAAAGGAAAGTCATTGGGAGGTTGTGGATTGTCTCGGTCGTAAATGCCGATCTCTCCCACCAATGCCGGGTCCAGGAAAGGCTGGGTTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGTTATTCAGCTCTTGAAGGAACTGCCTCTGCCTCAGCAGAGGTTCACCAATATGATTCTTGCCTCAATAGCTGGAGCAGTTTGTCGAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTGAATGGTCTGGTTTATGCTGTTGGAGGGTATGGGGAGAATGGAGACAGTTTGTCCAGTGCTGAGGTGTATGATCCAGATACTGACGAATGGACACTGATAGAGAGTCTTCGCCGTCCGAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTCACCATTGGAAACTCCAAGTTTGTTGATATATACAACCCTGAGAGACACACCTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTAGTGGGAAAAAAGTTGTTCTGCATAGAGTGGAAGAACCAGCGGAAGCTGGCTATATTCAGTCCAGAGGACAATTCATGGGAAATGGTACCGGTTCCTTTGACAGGGAGCACTAGTGTTGGCTTTCGGTTTGGGATGCTGGATGGCAAGTTGCTGCTCTTCCCTCTGCTCGCAGAACATGCTCATCAAACATTGTTGTATGATCCGAATGCAGCTCTGGGGTCAGAGTGGCGAACTTGTGACATAAGACCATCTGGTTTGTGCTTGTACTGTGTAACAATCAAGGCATGA 1158 0.4611 MPDLAVGKKRFIQPNMCFTNLTNQDKSTLSQSDNCFFSEALSEDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKRWRSFIQSKAFTTVRKLAGMLEEWLYFLTTDCEEKESHWEVVDCLGRKCRSLPPMPGPGKAGFGVVVLNGKLLVMAGYSALEGTASASAEVHQYDSCLNSWSSLSNMNVARYDFACAEVNGLVYAVGGYGENGDSLSSAEVYDPDTDEWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHTWCEIKNGCVMVTAHAVVGKKLFCIEWKNQRKLAIFSPEDNSWEMVPVPLTGSTSVGFRFGMLDGKLLLFPLLAEHAHQTLLYDPNAALGSEWRTCDIRPSGLCLYCVTIKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03449 385 Pfam F-box domain 51 86 IPR001810 GO:0005515
Viun1g03449 385 SUPERFAMILY Kelch motif 99 343 IPR015915 GO:0005515
Viun1g03449 385 PANTHER OS02G0202900 PROTEIN 8 378 IPR045887 -
Viun1g03449 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Viun1g03449 385 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Viun1g03449 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Viun1g03449 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Viun1g03449 385 SMART kelc_smart 247 294 IPR006652 GO:0005515
Viun1g03449 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Viun1g03449 385 Pfam Kelch motif 239 279 IPR006652 GO:0005515
Viun1g03449 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Viun1g03449 385 Gene3D - 85 379 IPR015915 GO:0005515
Viun1g03449 385 CDD F-box_AtAFR-like 48 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03449 Viun-Chr1 41443613 41446398 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03449 52 230 Miscellaneous Gene Families AT4G33900 29.744 3.78e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03449 - - gmx:100802912 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03449 1 41443613 41446398 Viun3g02267 3 19844966 19848455 PCT