Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02255 ATGAGAACAAGGAGAGGAGCTTGCTATTCTGGAGTAGTGTCAAGGATGTGTTCGGATGTGAGGCTTGCCAATAAAAACAAGGATCTGCACATGCATATGCGTGTGCATGTCGCCGGAGACTCCTTTATTTATAGCCGAAAAAGGCAGAAGAAGACGCCGGAAAAAACCGTTACCGATTACGATTTTTTTGAGTCTTTGCCGGATGACCTTGTAATCTCTATCTTCTGCAAGCTTAGTTCTACCGCCACTAAACCTTCCGATTTTCTCAATGTTTTAATCACGTGTAGGAGATTAAACAAGTTAGCACTACATTCGCTTGTTTTGTCCAAAGTCTCACCCAGAGCTTTCGCTATTAGAGCCAAAGATTGGTGCGATTCGGCGCACCGTTTCCTCAAACACTGTGCGGATGCCGGAAATGTTGAAGCCTGTTACACTTTAGGCATGATTCGGTTCTACTGTTTGCAAAACCGAGGGAGCGGCGCGTCTTTAATGGCGAAGGCAGCGATAAACTCCCACGCGCGTGCTCTGTACTCGCTGGCCGTGATTCAGTTTAACGGCAGCGGCGGAACCAAAAGCGACAAGGACTTACGCGCCGGCGTGGCGCTCTGCGCCAGAGCGGCGTTTCTCGGCCACGTCGACGCGCTGCGCGAGCTCGGTCACTGCCTGCAAGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGGCGGCGGTTCCTCGTGCAGGCAAACGCGCGGGAGCTCGCGGCCGTGTTGTCGACGAGCGCCGCCGCGCGCCACTGGCTGACGTGCAACCTTCAGCCACAGCTTCGGCAGGGGATCGGATGTCCGTTGCTCAGCGATTTCGGATGTAACGTCCCGACGCCGGAGGTGCATCCGGCGAGCCGATTCATGGCGGAGTGGTTCGCAGCTCGCGGCGGTTCGCCCGGACAGGGGCTGAGGTTGTGTTCACACGCGGGGTGCGGGCGGCCCGAGTCCAGGAAGCACGAGTTTCGAAGGTGTTCTGTGTGTGGCGCGGTGAACTATTGCTCACGCGCGTGCCAAGCGCTCGATTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCCGTGGAGCGGTGGCTGGACGAAGACGGCGAAGACATCGGAGACGAGGATAGTGACGGCGAGGTCATGGCTATGGCGGATAGTTAG 1167 0.5698 MRTRRGACYSGVVSRMCSDVRLANKNKDLHMHMRVHVAGDSFIYSRKRQKKTPEKTVTDYDFFESLPDDLVISIFCKLSSTATKPSDFLNVLITCRRLNKLALHSLVLSKVSPRAFAIRAKDWCDSAHRFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTSAAARHWLTCNLQPQLRQGIGCPLLSDFGCNVPTPEVHPASRFMAEWFAARGGSPGQGLRLCSHAGCGRPESRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDEDGEDIGDEDSDGEVMAMADS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02255 388 SUPERFAMILY F-box domain 50 119 IPR036047 GO:0005515
Viun3g02255 388 Gene3D Tetratricopeptide repeat domain 117 304 IPR011990 GO:0005515
Viun3g02255 388 MobiDBLite consensus disorder prediction 369 388 - -
Viun3g02255 388 CDD F-box_SF 64 102 - -
Viun3g02255 388 Pfam MYND finger 319 359 IPR002893 -
Viun3g02255 388 SUPERFAMILY HIT/MYND zinc finger-like 314 364 - -
Viun3g02255 388 SUPERFAMILY HCP-like 119 243 - -
Viun3g02255 388 Gene3D - 308 363 - -
Viun3g02255 388 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Viun3g02255 388 PANTHER MYND DOMAIN-CONTAINING 37 375 IPR044508 -
Viun3g02255 388 FunFam Predicted protein 307 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02255 Viun-Chr3 19442997 19444806 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02255 - - gmx:100798174 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02255 3 19442997 19444806 Viun3g02255 3 19442997 19444806 ECH
Viun1g03462 1 41508623 41510277 Viun3g02255 3 19442997 19444806 PCT