Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02243 ATGGAAGAAGATGAAGAAGAGGGCCATGCCATGCTCATCACTCACCTTCACCATCACCATTTCTCTCACACACTCTTACCTTCTTTTACCCTTCAACCTCACCCTACACTCTCTCAACAACTCCCCAGATGGTCCTTCTATGGCATTGATGATTACTTCGTAGATGATTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGATGGAGCCTCTAAAGCATGCATCTAAGAAGTCTCGAAGAGACAGGAGCCGAGGAAAATCATCTGGAAGGTCCTCCAGCGATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCAACATTTTTCCGTTTCCGCACTGTATGCCAGCGATGGAATTCCTTGCTGAGTTCTCAAAGTTTTTCTCAACATTGTGCTCAAGTCCAACAAGCGAACCCATGGTTTTACACTGTTACTCATGAACATACAAATTCTGCAGCCATGTATGACCCTTCTATGAAGAAGTGGTACCACCCCACTACATTAGCACTACCCGCAGAGTTGATAGTTTTGCCAGTGGCTTCTGCAGGGGGTTTAGTTTGTTTTCTTGACGTATATGGTCAAACTTTATATGTTTGTAACCCATTGAGTGAATCCGTAAAGGAGTTACCATCTTGTTCAGTAAGGGTTGGGTCTCGCGCTGCTGTGGGAATGACAGTAGATGAGAACTCAACTGGTGCTGCTGTCTACAGGATCATGCTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCGGGAACAAAGTCATGGAGCTATCCAGGAAACATGCCGGCGGATATTAAGCTGCCACTATCTCTGAATTTTAGGTCACAAGCGATTTTCATTGACAGCACCCTTTACTTCATGCATTCGGATCCTGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGGTGCAGTACATAATCCCAGCGCCATTGCATCTGAGTGACCACACACTTGCTGAGTGTGATGGTCGGATATTGCTTGTGGGGTTGCTCACAAAGAATGCAGCCACCTGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGAATTGCTTGGGAAACAAAGGCTTGCTCTTGTTATCATTGAGATCAAGACAAATGAATCGATTAGTTACATACAACATTGCAAGTAAGGAATGGGTGAAGGTTCCTGGGTGTGTGATGCCACATGGAAGAAAACGGCAATGGATAGCACATGGTACTGCATTTTATCCATGCCTCACTGCGACGGCTTGA 1374 0.4498 MEEDEEEGHAMLITHLHHHHFSHTLLPSFTLQPHPTLSQQLPRWSFYGIDDYFVDDFCGLVMAAGKSGSFRMMEPLKHASKKSRRDRSRGKSSGRSSSDEAMEQQIWKDLPEDLFEPVIARLPIATFFRFRTVCQRWNSLLSSQSFSQHCAQVQQANPWFYTVTHEHTNSAAMYDPSMKKWYHPTTLALPAELIVLPVASAGGLVCFLDVYGQTLYVCNPLSESVKELPSCSVRVGSRAAVGMTVDENSTGAAVYRIMLVGCDGEYEIYDSGTKSWSYPGNMPADIKLPLSLNFRSQAIFIDSTLYFMHSDPEGIVSYDMATGVWVQYIIPAPLHLSDHTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMNCLGNKGLLLLSLRSRQMNRLVTYNIASKEWVKVPGCVMPHGRKRQWIAHGTAFYPCLTATA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02243 457 PANTHER BNACNNG10540D PROTEIN 78 439 - -
Viun3g02243 457 Gene3D - 144 445 IPR015915 GO:0005515
Viun3g02243 457 FunFam F-box only protein 6 157 444 - -
Viun3g02243 457 MobiDBLite consensus disorder prediction 74 102 - -
Viun3g02243 457 FunFam F-box only protein 6 107 146 - -
Viun3g02243 457 SUPERFAMILY Galactose oxidase, central domain 171 441 IPR011043 -
Viun3g02243 457 SMART fbox_2 110 150 IPR001810 GO:0005515
Viun3g02243 457 Gene3D - 107 143 - -
Viun3g02243 457 ProSiteProfiles F-box domain profile. 104 149 IPR001810 GO:0005515
Viun3g02243 457 Pfam F-box domain 107 146 IPR001810 GO:0005515
Viun3g02243 457 SUPERFAMILY F-box domain 101 180 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02243 Viun-Chr3 19301344 19304727 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02243 - - pvu:PHAVU_002G173200g 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02243 3 19301344 19304727 Viun3g02243 3 19301344 19304727 ECH
Viun1g03471 1 41564332 41568645 Viun3g02243 3 19301344 19304727 PCT