Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03471 ATGGAAGGGGTGGCCATGCTGAAGCAGCTAATTGGTCAGCTTCAGCAGCTATTGGACTCTTCCCATTCCCATTCTCTGATTCTTGAACCTTCACACCACACTCTCCTCTTCCAACAACAACACCCCAGATGGACATCCTTTGATGTTGAAGATAGCTCTGTAGATGACTTTTGTGGCCTTGTAGTGACAGCAGGAAAGTCTGGCCGTTTCAGGATGTCAGAGCCTGTGAAGTCTCCACCTTCTAAGAAGTCTCGTAGAGATAGAAGCAGGGGCAAATCATCTGGACGATCCTGCTCAACTGAAGTTATGGATCAAGAAATTTGGAAAGATTTTCCGGAAGATTTATTTGAGGCTGTGATAGCACGACTCCCCATTGCTACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTTACTTCTCAAAGTTTTTCTCAGCATTGTACTCAAGTTACACAAGCAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAACTCGGGAGCTATGTACGATCCTTCTTTGAAAAAATGGCACCACCCAACTATATCGACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCCGGTGGTTTAGTTTGCTTTCTTGACATTGGTCATCGTAACTTCTTTGTTTGCAACCCACTGACTCAATCCTTCAGGGAGTTGCCAGCTCGATCAGTTAAGGTCTGGTCTCGGGTTGCTGTAGGGATGACAATTAACGGAAACTCGGCTGGTTCAGGCTACAAGATCTTATGGGTTGGTTGTGATGGAGAATATGAAGTTTACGACTCAGTCAGAAATTCTTGGATTCGTCCTGGAAACATGCCTGCAGGTATGAAGCTGCCACTGTCGCTGAACTTTAGGTCTCAAGCTGTCTCTATCGATAGCATGCTTTACTTCATGCGATCAGACCCAGAAGGGATTGTTTCGTACGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCGTTGCATCTGACTGATCACACTCTGGCCGAGTGTGATGGCCAGATCATGCTTGTGGGTTTGCTCACAAAGAATGCAGCTACTTGTGTATGCATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCCTGAGGTCGAAACAGATGAATAGATTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGCGTGGGAGAAAACGACAGTGGATAGCTTGTGGTACTGCATTTCATCCATGCCTCACAGCGCTGGCATGA 1374 0.4636 MEGVAMLKQLIGQLQQLLDSSHSHSLILEPSHHTLLFQQQHPRWTSFDVEDSSVDDFCGLVVTAGKSGRFRMSEPVKSPPSKKSRRDRSRGKSSGRSCSTEVMDQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSQHCTQVTQANPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFRELPARSVKVWSRVAVGMTINGNSAGSGYKILWVGCDGEYEVYDSVRNSWIRPGNMPAGMKLPLSLNFRSQAVSIDSMLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTALA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03471 457 SUPERFAMILY F-box domain 103 183 IPR036047 GO:0005515
Viun1g03471 457 SUPERFAMILY Galactose oxidase, central domain 147 438 IPR011043 -
Viun1g03471 457 SMART fbox_2 111 151 IPR001810 GO:0005515
Viun1g03471 457 PANTHER BNACNNG10540D PROTEIN 83 451 - -
Viun1g03471 457 FunFam F-box only protein 6 158 444 - -
Viun1g03471 457 CDD F-box_AtFBW1-like 110 147 - -
Viun1g03471 457 Gene3D - 108 144 - -
Viun1g03471 457 Pfam F-box domain 108 147 IPR001810 GO:0005515
Viun1g03471 457 ProSiteProfiles F-box domain profile. 105 150 IPR001810 GO:0005515
Viun1g03471 457 FunFam F-box only protein 6 108 147 - -
Viun1g03471 457 MobiDBLite consensus disorder prediction 71 98 - -
Viun1g03471 457 Gene3D - 145 446 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03471 Viun-Chr1 41564332 41568645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03471 - - gmx:100810179 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03471 1 41564332 41568645 Viun3g02243 3 19301344 19304727 PCT