Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02217 ATGGCGGGGGAGAATAGTGTTGAGATGGTGGCATTGGAGTGTCTGGGGAAAGGGTTCGATATGGCCAGTGATTTTCGGTTGAGGTTTGCAAAGGGGATTCGTGGAGAGAGGTTGGTGGTGCTTGATGAACATAACAAGAGGGATATCTTGATTCCTGGGACTGGAGGAGTTACCATTAAAGCGGTTTCTGAGAATATTCGGTGTGATAAAGGGGATAGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCGGCAGTGCAAGGGAAAGTTCCTTCTGGGTATTTTAATGCGCTTTTCGATTTGACTGGTGATTGGTTTCGTGATGCTGCTGACATAAAATACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATTCTGCAAGAAGAGGTAAAGAAGTCTGTTCCGGCTCAGTGGGATCCAGCTTCGTTGTCTAGGTTCATACAGACATATGGTACACACATAATAGTGGGTATGGCTGTAGGAGGTCAAGATGTAATTTGTGTCAAACAAAAGCATTCATCAAAAATTCCTCCTGGTGATCTAAGGAGACATTTAGAGGATCTTGGAGATTTTCTTTTCTCAGATGTGAGAAGCCCTTCTTTACTACAGGGGAAGACGGCAGATGGAAAACAGAAGGTCCCTGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGACTCACTATTATTTGTTCAAAAAGGGGAGGAGATATGTTCAAACACAGTCACTCAAATTGGCTTCAGACAGTGCCTTCTAACCCTGACGCAATCCTCTTCAAGTTTGTTCCTATTTCCTCACTTCTGACAGGAATTCCGGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGCTACAAGCCTTCTCTTGATGATTTACAATACTTTTTGGAGTTTCAAATTCCGAGGCAATGGGCACCCATGTTTTGTGAGCTGCCACTCAGACATCAGCGGAGAAAGACTGCTTCCCCTTCACTGCAATTTAGTTTCCTGGGTCCGAAGCTTCATATCATCTCTACACAGGTGGTAAGTGAACAAAAACCTGTGGTTGGTATGCGCTTGTACTTGGAGGGAAGGAAATGTGATAGACTTGCTTTGCATATACATCATCTTTCTAGCCTTCCAAATAAAATGGTCCTCTCTTCAAGAACGTCAAACTCAAGCATGCCGTCTATGTGGCGAGGATCTGACGATAACGATTCGAGTGATCAATTTCTGGAACGAGTAAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAACATGACCCTAACTGGTTGAACAGTTCTGGAGGTGTTTATATTGTTACAGGTGCACAGCTCCTTAGCAAAGGAAGTTGGCCAAGGAATGTGCTTCACCTGCGTCTTCTGTTCACTCATATACCGAATTGCAGTATCCGGAAGTTAGAGTGGTCTGCTGCTCCAGAGGCTTCAAGAAAAACATCTTTTCTGACAAATTTGAGCACAACATTTTCATTCACACAGCATGGCAACACTGGTCCTCCAAAGCAGGCTCCAACTGCACTGAATTCTGGTGTTTATCCAGATGGTCCACCTGTGCCAGTTCGCTCTGGTAAACTTCTTAAATACGTGGAGACAGCTGAGGTGGTGCGAGGTCCACATGATGCTCCTGGCCATTGGTTGGTAACTGCTGCTAAGCTTGTCACTGATGGTGGTAAGATTGGATTACAGGTGAAGTTTGCATTGCTAGATTATTGGTGA 1830 0.4383 MAGENSVEMVALECLGKGFDMASDFRLRFAKGIRGERLVVLDEHNKRDILIPGTGGVTIKAVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSAVQGKVPSGYFNALFDLTGDWFRDAADIKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQKHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQGKTADGKQKVPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKHSHSNWLQTVPSNPDAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSLDDLQYFLEFQIPRQWAPMFCELPLRHQRRKTASPSLQFSFLGPKLHIISTQVVSEQKPVVGMRLYLEGRKCDRLALHIHHLSSLPNKMVLSSRTSNSSMPSMWRGSDDNDSSDQFLERVRWKRFSNVCTAVVKHDPNWLNSSGGVYIVTGAQLLSKGSWPRNVLHLRLLFTHIPNCSIRKLEWSAAPEASRKTSFLTNLSTTFSFTQHGNTGPPKQAPTALNSGVYPDGPPVPVRSGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02217 609 SMART MACPF_8 122 319 IPR020864 -
Viun3g02217 609 MobiDBLite consensus disorder prediction 530 549 - -
Viun3g02217 609 Pfam MAC/Perforin domain 105 317 IPR020864 -
Viun3g02217 609 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 6 608 IPR044663 GO:0006952|GO:0012501|GO:2000031
Viun3g02217 609 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 331 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02217 Viun-Chr3 18848260 18853332 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02217 - - gmx:100781070 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02217 3 18848260 18853332 Viun3g02217 3 18848260 18853332 ECH
Viun1g03486 1 41620378 41625159 Viun3g02217 3 18848260 18853332 PCT