Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01626 ATGAAGACCTCAAATCTTGTGTTCATCCTTACCATTATCTCAATGTGCAGCATTTGCTTGGCACAAAACTCCCCGCAAGATTTCCTTGATGAGCACAACAAAGCTCGTAAAGAGGTTGGTGTTAAACCACTGGTATGGGACGAAACCCTTGTGGCCTATGGGAAGAATTATGTGGAATCAAAGAAAAAAACATGTGCATTTGAGCACTCTAATGGGCCTTATGGGGAGAACTTGGCACAAGGTTCTGGTGACTTGAGTGGCGTGGACTCGGTGAAAACGTGGGTGGCAGAGAAGGAGTTTTATGATGAGAAGACGAACGAGTGTGTTAAGGAAGAGTGTTTGCATTACGTTCAGGTGGTTTGGGGCGACACGGAGAGTGTTGGATGTTCTAGAACCAAGTGTGACAATAATTGGATGTATGTTATCTGCAACTATAACCCTCCGGGCAATTACGTTGGAGTGCGGCCTTATCCGATTTCAAAGTAA 486 0.4486 MKTSNLVFILTIISMCSICLAQNSPQDFLDEHNKARKEVGVKPLVWDETLVAYGKNYVESKKKTCAFEHSNGPYGENLAQGSGDLSGVDSVKTWVAEKEFYDEKTNECVKEECLHYVQVVWGDTESVGCSRTKCDNNWMYVICNYNPPGNYVGVRPYPISK 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01626 161 Gene3D CAP 19 159 IPR035940 -
Viun3g01626 161 SMART SCP_3 23 153 IPR014044 -
Viun3g01626 161 Pfam Cysteine-rich secretory protein family 29 145 IPR014044 -
Viun3g01626 161 PRINTS Allergen V5/Tpx-1 family signature 113 129 IPR001283 -
Viun3g01626 161 PRINTS Allergen V5/Tpx-1 family signature 90 103 IPR001283 -
Viun3g01626 161 PRINTS Allergen V5/Tpx-1 family signature 44 62 IPR001283 -
Viun3g01626 161 PRINTS Allergen V5/Tpx-1 family signature 140 153 IPR001283 -
Viun3g01626 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 27 154 IPR001283 -
Viun3g01626 161 SUPERFAMILY PR-1-like 22 157 IPR035940 -
Viun3g01626 161 CDD CAP_PR-1 25 157 - -
Viun3g01626 161 ProSitePatterns CRISP family signature 2. 140 151 IPR018244 GO:0005576
Viun3g01626 161 FunFam Putative pathogenesis-related protein 1 22 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01626 Viun-Chr3 11246841 11247634 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01626 K13449 - gmx:100802988 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01626 3 11246841 11247634 Viun3g01626 3 11246841 11247634 ECH
Viun3g01626 3 11246841 11247634 Viun6g02951 6 32524214 32524896 PCT