Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01283 ATGGACTCATCGTTTCAAGGTCCAAACCACCAAAACGACGACGTTTTCCTCGACGCTCTACCGCACTGCCCCTTCAACCATTGCCCCGCTACCGCTGATACTTCACCGGAATCTTCCGCAGAGGCTTCCATTCTTTCCGACCTCAACCCACCCTCCCCAACTCCGGCAACCACAGTCCGCCGTCGTCCGACACGCCGTCATTCTCCGGCTAGGGAATCCAAGAAGAACGGTTCCGACGACAGTTCGCCCACCGTTCCCGGAGCGAGCCTTTGGAGCGATCGAAACCTCGAAACTCCGAAAGAAAACGAGGATTCCCCCGAGAAATGCGATTCGAATCAAAAGAAACTTCGTTCCTCTCCATCTCCAAGCGTTGCCAGCGAAGAGGGGAACGAGGAATCGACGTTAACCTCCGCCGAGAATGACGACAGAGCCACCGATTCCGCGGACTCAGCCGTGGAGATCGGTAATTCCCCAATTAACTTGCTCGATTATGTAACAGGGTTGGTGATTAGAGCTATTGTGTTTCAAATCAATGCTTTTTTTGTGTTAGTGAAATGCCCAGTGTGGCTTACGGTACACGCTTTCATGTTTTTTATTGACCCTTTTGGAGCAATTAGAATGGGGAAAGGTTTGTTGGTGGATATTTTGGGTAGAGTGTTGTGTGGTGTTTGTGGGTGCATTGGTTCTTCGGCTCAGGGGTGGTTAAAAGAGCATAAGTCTTTGTGGAATGTTGCATTTAGGTGTGGGTGGGGATTGTTGTGGTCAGTCTATGTTTGTTGCATTTTGTGTGCTCTTTTGGTTTGTTCTCTTGTGGTGAGTGGGATTTTGGTGAAGAGTTTGGTGGAGAAGCCTTTTCAGATGAGTCAGGGTTTTAACTTTGATTACACCAAACAGAGTCCTTTTGCATTGGTGCCTGTGATGTCTTGTGATAATGTTGGGATGGGCCATGATTCTGGGACAAACGTTGCCGTTGGAAAGCGGATGGGTAGAAGGGTTATACCTGCTAATCAAAAGGTGGAGGTCACTGTTTCATTGGTTGTGCCAGAGTCAGAATACAACACAAACCTTGGCATCTTTCAGATCAAGGTAGACTTCTTATCTTTTGATGGCAAAACTATTTGGACTGCGAACCAACCTTGCATGTTAAAATTCATAAGCGAGCCTATCCGGCTAATGATGACATTCCTCAAGATTGTACCACTTGTCACTGGTTTTGTATCAGAAACCCAGACACTGAATGTCAATCTGAGAGGTTTCGTTGAAGGAAATGTACCTACTTCATGCTTAAAAGTAACACTAGAGCACCGAGCAGAATATCCACCCGGTGCTGGCATTCCTCAAATATATGATTCATCAGTTATCATTGAATCAGAACTTCCCTTAATCAAGAGAATCTTATGGCGTTGGAAGCTGGGCATATTTCTATGGATCGCAATGATGGCTTTCATGATGGAGTTACTATTTGTTCTGGTGTGTTGCTTGCCTATAATTATTCCAAGAACCAGGCAAGGTAGTGATTCTGCTCGTGTTACTGGTGGTAATTAA 1545 0.4615 MDSSFQGPNHQNDDVFLDALPHCPFNHCPATADTSPESSAEASILSDLNPPSPTPATTVRRRPTRRHSPARESKKNGSDDSSPTVPGASLWSDRNLETPKENEDSPEKCDSNQKKLRSSPSPSVASEEGNEESTLTSAENDDRATDSADSAVEIGNSPINLLDYVTGLVIRAIVFQINAFFVLVKCPVWLTVHAFMFFIDPFGAIRMGKGLLVDILGRVLCGVCGCIGSSAQGWLKEHKSLWNVAFRCGWGLLWSVYVCCILCALLVCSLVVSGILVKSLVEKPFQMSQGFNFDYTKQSPFALVPVMSCDNVGMGHDSGTNVAVGKRMGRRVIPANQKVEVTVSLVVPESEYNTNLGIFQIKVDFLSFDGKTIWTANQPCMLKFISEPIRLMMTFLKIVPLVTGFVSETQTLNVNLRGFVEGNVPTSCLKVTLEHRAEYPPGAGIPQIYDSSVIIESELPLIKRILWRWKLGIFLWIAMMAFMMELLFVLVCCLPIIIPRTRQGSDSARVTGGN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01283 514 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 154 508 IPR009617 GO:0019915
Viun3g01283 514 MobiDBLite consensus disorder prediction 96 114 - -
Viun3g01283 514 MobiDBLite consensus disorder prediction 1 148 - -
Viun3g01283 514 MobiDBLite consensus disorder prediction 115 133 - -
Viun3g01283 514 Pfam Putative adipose-regulatory protein (Seipin) 264 481 IPR009617 GO:0019915
Viun3g01283 514 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01283 Viun-Chr3 8000971 8003686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01283 K19365 - gmx:100813988 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01283 3 8000971 8003686 Viun3g01283 3 8000971 8003686 ECH
Viun6g02592 6 30481629 30484212 Viun3g01283 3 8000971 8003686 ECH
Viun3g01283 3 8000971 8003686 Viun6g02592 6 30481629 30484212 PCT