Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01089 ATGGCAGCAACAATATCAGCAATGGCCATGATCAACGCCAAATGCCTCAACCCCACATCGCCAAAATTCCCCACCAAACTCACACCCTCAAAACCTTCTCTCCTTTCTCTTCCCAAGGGCCTCATCGCCGCCTCACCCGAACCCACCAACCTCTCCCTTCCCACAGCCGTCGCCGGAGCCATATTCACGGCCCTCGGAACCTGCGACGCCGCCTTCGCCGCGCAGCAGATAGCGGACATAGCGGAAGGCGACAACCGCGGCCTGGCCCTGCTGCTGCCCATAATCCCGGCCATAGGGTGGGTGCTCTTCAACATTTTTCAGCCGGCGCTCAACCAAATCAACCGCATGCGCAGCACCAAAGGACTCATCATCGGGCTGGGTCTCGGCGGCTTGGCCGGACTCATGGCGGCGGCGCCGCCGCATGCCGCTGCCGCTGAAGTGGCGGCGATCGCCGAAGCCGCGAGTGACAACAGGGGGCAGCTTCTGCTGTTTGTGGTGGCACCGGCTATTGCGTGGGTGCTGTTCAACATCTTGCAGCCTGCTCTGAACCAGATCAACAGGATGAGATCTCAGTGA 576 0.6076 MAATISAMAMINAKCLNPTSPKFPTKLTPSKPSLLSLPKGLIAASPEPTNLSLPTAVAGAIFTALGTCDAAFAAQQIADIAEGDNRGLALLLPIIPAIGWVLFNIFQPALNQINRMRSTKGLIIGLGLGGLAGLMAAAPPHAAAAEVAAIAEAASDNRGQLLLFVVAPAIAWVLFNILQPALNQINRMRSQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01089 191 Hamap Photosystem II protein Y [psbY]. 84 118 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun3g01089 191 Pfam Photosystem II protein Y (PsbY) 156 188 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun3g01089 191 Pfam Photosystem II protein Y (PsbY) 84 116 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun3g01089 191 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 190 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01089 Viun-Chr3 6826862 6827770 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01089 K02723 - gmx:100779397 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01089 3 6826862 6827770 Viun1g03399 1 41194657 41195509 PCT