Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03399 ATGGCAGCAACCATAGCAGCAACCATGGCCATAGTAAACACCAAGAGCCTAAACGTTCAACTCCCACCTTCAAAACCCACCCTTTCTCTCTTTTCCCATCTCAACCTTCCAAAGGGTCTAACCTCCACCGTTAACGCCACCGTGTCAGCGACAACATCATCCATAGCGGGCACTGCAATCGCGGGGGCAGTTTTTTCCACCCTCGGATGCTGTGACGCGGCTTTTGCGGCGTCGCAAATAGCCCAGATAGCGGAGGGCGACAACCGTGGGCTTGCGCTGTTGCTGCCGGTGGTTCCCGCCTTGGCGTGGGTGCTGTTTAACATTCTGCAGCCGGCGCTGAACCAGGTGAACCGCATGCGGAGCAGCAGAGGGGTCATGGTTGGGCTTGGGCTTGGGCTCGGCGCCTCGGGCTTGGTGTGGGGCCCGGAAGCGTCAGCGAGTGAGATGGGTCTGATTGCGGATGCTGCGGATGCTGCGGATGCTGCGGCGGGCAGTGACAACAGGGGTCAGCTTCTGCTGTTTGTGGTTGCACCGGCGATTGTGTGGGTTCTGTACAACATTCTGCAACCTGCACTTAATCAGATTAACAGAATGAGATCAAAATAA 606 0.5693 MAATIAATMAIVNTKSLNVQLPPSKPTLSLFSHLNLPKGLTSTVNATVSATTSSIAGTAIAGAVFSTLGCCDAAFAASQIAQIAEGDNRGLALLLPVVPALAWVLFNILQPALNQVNRMRSSRGVMVGLGLGLGASGLVWGPEASASEMGLIADAADAADAAAGSDNRGQLLLFVVAPAIVWVLYNILQPALNQINRMRSK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03399 201 Pfam Photosystem II protein Y (PsbY) 87 119 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun1g03399 201 Pfam Photosystem II protein Y (PsbY) 166 198 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun1g03399 201 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Viun1g03399 201 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 201 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03399 Viun-Chr1 41194657 41195509 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03399 K02723 - gmx:100814665 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03399 1 41194657 41195509 Viun1g03399 1 41194657 41195509 ECH
Viun3g01089 3 6826862 6827770 Viun1g03399 1 41194657 41195509 PCT