Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01076 ATGGGAGGTAAGAGTTCGAAAGTCTGCGAAAGAAGGCATGTTTCATCGTATGGATCTGCTGGTTCATCGTCTTCATGGGACACCTATGGATACCCTCAGACACCAAATACTTACCCACAACAAAATAATTATCATACGCCTCTTCATAACCGTGCCCCCACTCTTCCATTCCATGACTATTCACAGCCAAAAAGGAGGTTGGATAGGAGATACTCCAGAATAGCTGATGATTACAATTCACTGGATGAGGTTACCAGTGCTCTTTCACACGCTGGACTGGAATCTTCTAACCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGCTTACATCATATAGGAAGTGATCATAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGCTTTTGATGAGGATAATTTGATTCCTTGTTTTGGTTTTGGAGACGCATCAACGCATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAAGAAGTTCTTTCAAGATATAGAGATATTGTTCCTGGCCTGCGTCTAGCAGGACCCACTTCATTTGCTCCTATTATTGAGATGGCTATGACTATAGTTGAACAAAGTGGAGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACCAGAAGTGTTGACACGCAACATGGCCAGTTAAGTCCACAAGAACAGAAGACAATTGATGCAATTGTAAAAGCGAGTGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGTGATGGACCGTGGGAAATGATGAGGGAATTTGATGACAACATTCCAGCCCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCAAGGAGTGTAGATTCAAGAAGAAAAGAGACAGACTTTGCTCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACTATAGATCTTGGCATACTGGGTGCACGGAGGGGACATTCACCGGACAGGGTTCCTCTGCCTCCACCTCATTATGAGAGGACTTCTAGCAGCAGCGCAACATCTTTTCGTCCAAACAGTTCTCAGCAAAGTGCACCTACGTATTCTGACTTCGATAATGTTAACATGGCATCATCTTCAGGTGGCTTATATGATAACAAGGTTTGTCCAATTTGTCTGACTAACGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACATGTTGTGAATGTGGAGAAAACCTCGAATTCTGCCCCATATGCCGAAGCACAATCACTACAAGAATAAAGCTTTACTAG 1317 0.4214 MGGKSSKVCERRHVSSYGSAGSSSSWDTYGYPQTPNTYPQQNNYHTPLHNRAPTLPFHDYSQPKRRLDRRYSRIADDYNSLDEVTSALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPGLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWEMMREFDDNIPARAFDNFQFVNFTEIMSRSVDSRRKETDFALSALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPHYERTSSSSATSFRPNSSQQSAPTYSDFDNVNMASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGENLEFCPICRSTITTRIKLY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01076 438 SMART VWA_4 95 298 IPR002035 -
Viun3g01076 438 MobiDBLite consensus disorder prediction 16 43 - -
Viun3g01076 438 SUPERFAMILY vWA-like 97 279 IPR036465 -
Viun3g01076 438 PANTHER COPINE FAMILY PROTEIN 1 40 415 - -
Viun3g01076 438 MobiDBLite consensus disorder prediction 351 377 - -
Viun3g01076 438 MobiDBLite consensus disorder prediction 339 377 - -
Viun3g01076 438 Pfam Zinc finger, C3HC4 type (RING finger) 392 433 - -
Viun3g01076 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 438 IPR013083 -
Viun3g01076 438 Pfam Copine 120 333 IPR010734 -
Viun3g01076 438 ProSiteProfiles Zinc finger RING-type profile. 395 428 IPR001841 -
Viun3g01076 438 SUPERFAMILY RING/U-box 389 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01076 Viun-Chr3 6742862 6746984 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01076 K16280 - gmx:100800161 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01076 3 6742862 6746984 Viun3g01076 3 6742862 6746984 ECH
Viun3g01076 3 6742862 6746984 Viun1g03385 1 41118632 41122931 PCT