Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03385 ATGAATCCGGAGATAGAGACTTGGACAGTTTTGGTTGGTGTTCTGTGCATCTTGGTGTTCATTGTGAAGGAGTTTGTTATGGGGGGCAAGGGTTCAAAAGAAAGTGGAAGGAGGTATGAGTATGGTGCTTCTTCATCTTCATGGGATAATAACAACTATGGTGGATACCCTCCACAATCACCATATCCTTCTCATCAAACACCTCAGCACCAGCATGCATCAGCACCAACTCCATTTTATGATAATGCTCAGCCAAAAAGGAAGTTGGATAGGAAGTATTCAAGGATAGCTGATAACTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTGCATGACATTGGAAGTGGCCAAAACCCGTATGAGCAAGCAATTTCTATTATTGGGAAAACTTTATCTGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGATCAAGATGTATTTAGTTTCTTTTCGGAAGAGAGGTACTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTTACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTGATAATTGCAGATGGACAGGTGACTAGAAGTGTTGACACAGAACATGGCAACTTAAGTCCACAAGAGAAGAACACAATAGATGCAATAGTTAAAGCAAGTAAGTATCCACTATCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATTCCTTCTCGAGCATTTGACAATTTTCAGTTTGTTAATTTCACTGAAATAATGACAAGGAATGTAGACTCAAGCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAGTACAAGGCAACCATAGAGCATGGCATATTGGGTGCAAGGAGGGGTCATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATGGTAGGACTTCTTCCAGCATCAGCACAAAACCGACAAGATCAAACAGTTTTCAGCAGAGTGCACCTACACGCACTAGCTATGACCACAGTGTTCACACGGAGGCATCTGCAAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTCACCAATACGAAAGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAAGACCTCGAATTCTGTCCCATTTGCCGGAGCACGATCAACACCAGAATAAAGCTTTACTAG 1389 0.4183 MNPEIETWTVLVGVLCILVFIVKEFVMGGKGSKESGRRYEYGASSSSWDNNNYGGYPPQSPYPSHQTPQHQHASAPTPFYDNAQPKRKLDRKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERYCNGFEEVLSRYRQIIPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTEHGNLSPQEKNTIDAIVKASKYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSSRKETDFALSALMEIPSQYKATIEHGILGARRGHSPDRVALPPPLYGRTSSSISTKPTRSNSFQQSAPTRTSYDHSVHTEASASSLYDNKVCPICLTNTKDMAFGCGHQTCCECGEDLEFCPICRSTINTRIKLY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03385 462 MobiDBLite consensus disorder prediction 50 84 - -
Viun1g03385 462 Pfam Copine 142 355 IPR010734 -
Viun1g03385 462 SUPERFAMILY vWA-like 118 301 IPR036465 -
Viun1g03385 462 PANTHER COPINE FAMILY PROTEIN 1 66 439 - -
Viun1g03385 462 SMART VWA_4 117 320 IPR002035 -
Viun1g03385 462 CDD vWA_copine_like 96 346 IPR010734 -
Viun1g03385 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 462 IPR013083 -
Viun1g03385 462 MobiDBLite consensus disorder prediction 374 401 - -
Viun1g03385 462 SUPERFAMILY RING/U-box 411 457 - -
Viun1g03385 462 MobiDBLite consensus disorder prediction 50 78 - -
Viun1g03385 462 MobiDBLite consensus disorder prediction 359 401 - -
Viun1g03385 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 456 - -
Viun1g03385 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03385 Viun-Chr1 41118632 41122931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03385 K16280 - gmx:100798816 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01076 3 6742862 6746984 Viun1g03385 1 41118632 41122931 PCT