Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01069 ATGAAGTGCTTCTCTCTGTGCTTAGTCTCCTTTTGGGTTCTCCTTCCTCTCTGTTTGCTAAGTGTGTCATCCCAAAATATACCTGAGAGTGGCCAACAGCGAGCTAGCCTCCCACCAAGAGGTTGGAATTCTTATGATTCCTTTTGCTGGACAGTTTCTGAAGATGAATTCTTAGAAAGTGCTGAAATAGTTTCTGAACGTCTCAAGGCTCATGGATATGAGTTTGTGGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAAGGTGCCTATCCCGATTCTCTCGGATTTGACGTGATTGATGAATGGGGAAGGATGGTCCCAGACCCAGGAAGGTGGCCTTCTTCCACAGGTGGAAAGGGTTTCAAGGAAATAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACTCAAGCTGTCAATGCAAACACACCTATCTTAGATACAACAAAGGGAAGTGCATATCAAGAATCTGGTCGAGTTTGGCGTGCAAAAGACATAGCAATCCCAGAAAAGGCTTGTGCATGGATGCCTAATGGTTTCATGAGTGTAAATACAAAGTTAGCAGCTGGGAGAGCTTTTTTGAAATCCCTGTATGAGCAGTATGCCTCATGGGGTGTTGATCTAGTGAAACATGACTGTGTGTTTGGCGATGACTTGGAATTAAATGAAATAAGCTATGTGTCAGAGGTTCTCAGTGAGCTTAATCGGCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCGATGGCCAAGAGTGTCAGTGGACTAGTCAACATGTATCGAATAACAGGAGATGACTGGGATTATTGGGATGATGTCCGGGCTCATTTTGACGTAACAAGGGATTTTTCTGCAGCTAATATGATAGGAGGAAAAGGTCTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCAAGGTTCAAATAATGGTCCACACAGGTTTAGTAGGCTCAATCTAGAGGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGAGGGGATATGCGGAAGATCGATGCCATCACATACGAACTTATAACAAACCCTACCCTGCTAGAGATTAATTTCTTTAGCTCAAATAATATGGAGTTTCCTTATATCACAAGCTCAAACAACTTGAAGCACGCTCGAGGGAAAAAGCAAAGACCGAAGCAAGGAACAGAGACATCATCGTACACACATTCATTAGGTTTGACTGGCTGTAGCGAATCAAAGGCGAGTGGTTGGTCTGTTGAAAGTCATAACCATAACCAAGATCTTGAAACAATCTGCTGGAAAAAGGATGCAGAAAACCAGCACCAAGCTCCATTCTGCGTAAACAAGAGAGAACTTCAACTCAGATTAGATGGTGGGAGTATGCATCACCAGGATTACCGAGGGAAACACCAACTGGTTGCTACTGACAGCATGAAATTTTGCTTAGACGCTTCTCCAAAACGAAAGGTTACATCTAAAGAGTTCAAGAGAGGAACATTTTCTCCATGCAGATGGGATTCTAATCAGATCTGGGAACTGCACTCCAATGGGACCATGGTAAATAGTTACTCGGGTCTTTGTGCAACAGTCAAGTTTGTTGAAGCTGAGGTTAATAATGCTGGTGGGATTCGTTCTTGGATTGCAACAGGAAGAAAAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCAATGAGAAAACGGAGATATATGCGAAGACATCATATCTGGGGAAGATTCTTCCTGACAGAAGAATCGAATCATGCAAGGGGACGGAAGTGTGGAGTGGAAAGAACGTAATCACAACACAGGGGACGATATCAATGGACGTGGAAATTCATGGTTGTGCACTATTTGTTCTAAACTGCAACTAG 1932 0.4306 MKCFSLCLVSFWVLLPLCLLSVSSQNIPESGQQRASLPPRGWNSYDSFCWTVSEDEFLESAEIVSERLKAHGYEFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMVPDPGRWPSSTGGKGFKEIANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGSAYQESGRVWRAKDIAIPEKACAWMPNGFMSVNTKLAAGRAFLKSLYEQYASWGVDLVKHDCVFGDDLELNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKSVSGLVNMYRITGDDWDYWDDVRAHFDVTRDFSAANMIGGKGLKGNSWPDLDMLPFGWLTDQGSNNGPHRFSRLNLEEKRTQMTLWSLAKSPLMYGGDMRKIDAITYELITNPTLLEINFFSSNNMEFPYITSSNNLKHARGKKQRPKQGTETSSYTHSLGLTGCSESKASGWSVESHNHNQDLETICWKKDAENQHQAPFCVNKRELQLRLDGGSMHHQDYRGKHQLVATDSMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWELHSNGTMVNSYSGLCATVKFVEAEVNNAGGIRSWIATGRKGEIYLAFFNLSNEKTEIYAKTSYLGKILPDRRIESCKGTEVWSGKNVITTQGTISMDVEIHGCALFVLNCN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01069 643 Gene3D Aldolase class I 29 385 IPR013785 -
Viun3g01069 643 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 Pfam Alpha galactosidase A 52 146 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 SUPERFAMILY (Trans)glycosidases 32 383 IPR017853 -
Viun3g01069 643 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 MobiDBLite consensus disorder prediction 401 422 - -
Viun3g01069 643 SUPERFAMILY Glycosyl hydrolase domain 559 641 - -
Viun3g01069 643 SUPERFAMILY Ricin B-like lectins 491 553 IPR035992 -
Viun3g01069 643 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Viun3g01069 643 Pfam Alpha galactosidase C-terminal beta sandwich domain 561 640 IPR041233 -
Viun3g01069 643 Gene3D - 554 642 IPR013780 -
Viun3g01069 643 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 11 642 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01069 Viun-Chr3 6702534 6707469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01069 11 474 Glycoside Hydrolase AT3G26380 65.880 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01069 - - gmx:100783705 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01069 3 6702534 6707469 Viun3g01069 3 6702534 6707469 ECH
Viun3g01069 3 6702534 6707469 Viun1g03382 1 41095228 41100213 PCT